RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1158727" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1158727 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11782360 11782360 PRJNA1158727_P_NODE_128510_length_258_cov_1.237838_g121049_i0 PRJNA1158727 128510 258 1.237838 3.19362204 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 350 7.44e-92   NTclustered gi|820695469|tpe|LN714488.1| 572307 g121049 i0 91.667 49.6046511627907 252 21 100 0 4 255 300686 300435 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 12798 350 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
11784693 11784693 PRJNA1158727_P_NODE_64610_length_400_cov_0.987768_g57149_i0 PRJNA1158727 64610 400 0.987768 3.951072 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 695 0   NTclustered gi|1624698158|ref|XM_029013947.1| 189622 g57149 i0 98 699.35 400 8 100 0 1 400 769 370 Babesia ovata endonuclease-reverse transcriptase (BOVATA_050300), partial mRNA blastn 279740 695 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata
14332205 14332205 PRJNA1158727_P_NODE_106832_length_283_cov_1.828571_g99371_i0 PRJNA1158727 106832 283 1.828571 5.17485593 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 335 2.319999999999999e-87   NTclustered gi|820695469|tpe|LN714488.1| 572307 g99371 i0 87.986 1 283 34 100 0 1 283 157420 157138 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 283 335 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
20705736 20705736 PRJNA1158727_P_NODE_160597_length_242_cov_0.911243_g153135_i0 PRJNA1158727 160597 242 0.911243 2.20520806 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 448 2.3799999999999995e-121   NTclustered gi|124511707|ref|XM_001348951.1| 36329 g153135 i0 100 4 242 0 100 0 1 242 1825 2066 Plasmodium falciparum 3D7 DNA replication licensing factor MCM7 (PF3D7_0705400), partial mRNA blastn 968 448 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;