RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1158727" and tax_kingdom = "Bamfordvirae"

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tax_superkingdom 1

tax_kingdom 1

  • Bamfordvirae · 2 ✖

bioproject 1

  • PRJNA1158727 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14332456 14332456 PRJNA1158727_P_NODE_119212_length_268_cov_1.579487_g111751_i0 PRJNA1158727 119212 268 1.579487 4.23302516 Erythrocytic necrosis virus 1543320 Viruses Viruses 385 2.13e-102   NTclustered gi|1624806662|gb|MK638698.1| 1543320 g111751 i0 92.565 5.82462686567164 269 18 100 2 1 268 358 91 Erythrocytic necrosis virus isolate SEQ_13 putative RNA-dependent DNA polymerase mRNA, complete cds blastn 1561 385 1 Viruses   Bamfordvirae Nucleocytoviricota Megaviricetes Pimascovirales Iridoviridae   Erythrocytic necrosis virus
15065244 15065244 PRJNA1158727_P_NODE_148392_length_246_cov_1.132948_g140930_i0 PRJNA1158727 148392 246 1.132948 2.78705208 root 1 Root_unresolved Root_unresolved 446 8.719999999999999e-121   NTclustered gi|2620236085|gb|OR777220.1| 10515 g140930 i0 100 97.9674796747967 241 0 98 0 6 246 15223 14983 Human adenovirus 2 isolate HAdV-C2/USA/13R1/2017, complete genome blastn 24100 446 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;