RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

17 rows where analysis = "blastn", bioproject = "PRJNA1158727" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 17 ✖

bioproject 1

  • PRJNA1158727 · 17 ✖

analysis 1

  • blastn · 17 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1037795 1037795 PRJNA1158727_P_NODE_88501_length_317_cov_1.032787_g81040_i0 PRJNA1158727 88501 317 1.032787 3.27393479 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 427 4.22e-115   NTclustered gi|330840543|ref|XM_003292226.1| 5786 g81040 i0 91.586 97.6214511041009 309 26 97 0 9 317 437 129 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_92832), mRNA blastn 30946 429 0.995337995337995 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
1580172 1580172 PRJNA1158727_P_NODE_46622_length_533_cov_4.036957_g39176_i0 PRJNA1158727 46622 533 4.036957 21.51698081 Ripella sp. 805 1217113 Discosea other_Eukaryota 815 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g39176 i0 94.393 101.15947467167 535 23 100 7 1 533 14 543 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 53918 815 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
3588239 3588239 PRJNA1158727_P_NODE_77403_length_347_cov_3.817518_g69942_i0 PRJNA1158727 77403 347 3.817518 13.24678746 Vannellidae 95227 Discosea other_Eukaryota 577 4.3799999999999985e-160   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g69942 i0 96.821 100.190201729107 346 10 99 1 2 347 1679 1335 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 34766 579 0.996545768566494 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
4865559 4865559 PRJNA1158727_P_NODE_144584_length_248_cov_0.880000_g137122_i0 PRJNA1158727 144584 248 0.88 2.1824 Cryptodifflugia 1078833 Tubulinea other_Eukaryota 453 5.2600000000000005e-123   NTclustered gi|345294024|gb|JF694280.1| 1078836 g137122 i0 99.597 90.2056451612903 248 1 100 0 1 248 1521 1768 Cryptodifflugia operculata small subunit ribosomal RNA gene, partial sequence blastn 22371 453 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
4865730 4865730 PRJNA1158727_P_NODE_57764_length_440_cov_1.117166_g50303_i0 PRJNA1158727 57764 440 1.117166 4.9155304 Dictyostelium 5782 Evosea other_Eukaryota 551 3.4399999999999983e-152   NTclustered gi|330841829|ref|XM_003292845.1| 5786 g50303 i0 89.607 97.2772727272727 433 45 98 0 7 439 1042 610 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_73394), mRNA blastn 42802 556 0.991007194244604 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
5408974 5408974 PRJNA1158727_P_NODE_59385_length_429_cov_1.721910_g51924_i0 PRJNA1158727 59385 429 1.72191 7.3869939 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 224 8.289999999999998e-54   NTclustered gi|470529917|ref|XM_004368096.1| 1257118 g51924 i0 80.201 65.5990675990676 298 59 69 0 1 298 418 121 Acanthamoeba castellanii str. Neff ribosomal protein S17, putative (ACA1_292890), partial mRNA blastn 28142 224 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6140593 6140593 PRJNA1158727_P_NODE_79625_length_341_cov_0.787313_g72164_i0 PRJNA1158727 79625 341 0.787313 2.68473733 Vermamoeba 1260114 Tubulinea other_Eukaryota 586 7.14e-163   NTclustered gi|300078496|gb|GU001158.1| 5778 g72164 i0 97.654 75.950146627566 341 8 100 0 1 341 2270 2610 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 25899 586 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6681669 6681669 PRJNA1158727_P_NODE_132726_length_253_cov_1.677778_g125265_i0 PRJNA1158727 132726 253 1.677778 4.24477834 Stenamoeba aeronauta 2971262 Discosea other_Eukaryota 403 5.499999999999998e-108   NTclustered gi|2283789716|gb|OP179856.1| 2971262 g125265 i0 95.331 76.2806324110672 257 7 100 5 1 253 391 136 Stenamoeba aeronauta strain Stenaero small subunit ribosomal RNA gene, partial sequence blastn 19299 403 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Stenamoeba Stenamoeba aeronauta
6683225 6683225 PRJNA1158727_P_NODE_41866_length_592_cov_1.495183_g34462_i0 PRJNA1158727 41866 592 1.495183 8.85148336 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 483 1.7499999999999999e-131   NTclustered gi|470420395|ref|XM_004337241.1| 1257118 g34462 i0 81.802 89.3361486486486 577 103 97 2 17 592 1839 1264 Acanthamoeba castellanii str. Neff eukaryotic translation elongation factor 2, putative (ACA1_220140), partial mRNA blastn 52887 483 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6684722 6684722 PRJNA1158727_P_NODE_94066_length_305_cov_0.995690_g86605_i0 PRJNA1158727 94066 305 0.99569 3.0368545 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 102 2.78e-17   NTclustered gi|470459156|ref|XM_004341277.1| 1257118 g86605 i0 92.857 2.89508196721311 70 5 23 0 1 70 1097 1166 Acanthamoeba castellanii str. Neff ribosomal protein L3, putative (ACA1_264110), partial mRNA blastn 883 102 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9232408 9232408 PRJNA1158727_P_NODE_164788_length_238_cov_2.478788_g157326_i0 PRJNA1158727 164788 238 2.478788 5.89951544 Ripella sp. PS2 1217116 Discosea other_Eukaryota 176 1.22e-39   NTclustered gi|399764205|gb|JQ271716.1| 1217116 g157326 i0 83.59 82.0168067226891 195 25 80 7 48 238 1376 1185 Ripella sp. PS2 18S ribosomal RNA gene, partial sequence blastn 19520 176 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. PS2
18155428 18155428 PRJNA1158727_P_NODE_125615_length_261_cov_1.367021_g118154_i0 PRJNA1158727 125615 261 1.367021 3.56792481 Tychosporium acutostipes 668358 Evosea other_Eukaryota 399 7.379999999999998e-107   NTclustered gi|2467140639|dbj|LC720133.1| 668358 g118154 i0 94.253 52.5210727969349 261 15 100 0 1 261 11 271 Tychosporium acutostipes YIP-60 gene for 18S rRNA, partial sequence blastn 13708 399 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Tychosporium Tychosporium acutostipes
18155975 18155975 PRJNA1158727_P_NODE_153175_length_244_cov_1.801170_g145713_i0 PRJNA1158727 153175 244 1.80117 4.3948548 Echinamoeba thermarum 197648 Tubulinea other_Eukaryota 331 2.5200000000000006e-86   NTclustered gi|27526824|emb|AJ489261.1| 197648 g145713 i0 91.429 98.7254098360656 245 15 98 5 1 240 432 189 Echinamoeba thermarum 18S rRNA gene, isolate OSB1, clone 5 blastn 24089 331 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba thermarum
18158002 18158002 PRJNA1158727_P_NODE_72095_length_366_cov_1.576792_g64634_i0 PRJNA1158727 72095 366 1.576792 5.77105872 Arcyria cinerea 137621 Evosea other_Eukaryota 231 4.16e-56   NTclustered gi|2772191635|gb|PQ014995.1| 137621 g64634 i0 78.857 71.0027322404372 350 68 95 6 17 363 170 516 Arcyria cinerea voucher TUF105910 translation elongation factor 1-alpha (EF1a) gene, partial cds blastn 25987 231 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria cinerea
19432768 19432768 PRJNA1158727_P_NODE_90316_length_312_cov_2.577406_g82855_i0 PRJNA1158727 90316 312 2.577406 8.04150672 Tychosporium acutostipes 668358 Evosea other_Eukaryota 483 8.729999999999998e-132   NTclustered gi|256550195|gb|FJ792703.1| 668358 g82855 i0 94.551 21.9711538461538 312 17 100 0 1 312 542 853 Tychosporium acutostipes strain KE11AL small subunit ribosomal RNA gene, partial sequence blastn 6855 483 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Tychosporium Tychosporium acutostipes
21979907 21979907 PRJNA1158727_P_NODE_100618_length_292_cov_1.050228_g93157_i0 PRJNA1158727 100618 292 1.050228 3.06666576 Dictyostelium purpureum 5786 Evosea other_Eukaryota 52.8 0.027   NTclustered gi|330795589|ref|XM_003285807.1| 5786 g93157 i0 100 0.0958904109589041 28 0 10 0 244 271 951 978 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_94041), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
21982138 21982138 PRJNA1158727_P_NODE_39738_length_622_cov_4.289617_g32355_i0 PRJNA1158727 39738 622 4.289617 26.68141774 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 455 4.02e-123   NTclustered gi|470420395|ref|XM_004337241.1| 1257118 g32355 i0 80.56 60.2958199356913 607 105 97 9 21 622 2520 1922 Acanthamoeba castellanii str. Neff eukaryotic translation elongation factor 2, putative (ACA1_220140), partial mRNA blastn 37504 455 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;