RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1156092" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1156092 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2853664 2853664 PRJNA1156092_P_NODE_15343_length_297_cov_1.031250_g15213_i0 PRJNA1156092 15343 297 1.03125 3.0628125 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 448 3.0099999999999998e-121   NTclustered gi|226525288|gb|FJ872373.1| 156588 g15213 i0 93.96 69.3771043771044 298 14 99 4 1 296 16357 16652 Uncultured Verrucomicrobia bacterium clone 118 genomic sequence blastn 20605 448 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
21979753 21979753 PRJNA1156092_P_NODE_30678_length_243_cov_0.905882_g30548_i0 PRJNA1156092 30678 243 0.905882 2.20129326 Opitutus sp. GAS368 1882749 Bacteria Bacteria 73.1 1.68e-8   NTclustered gi|1085764882|emb|LT629735.1| 1882749 g30548 i0 82.418 30.8765432098765 91 9 38 6 26 116 2527548 2527465 Opitutus sp. GAS368 genome assembly, chromosome: I blastn 7503 73.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;