RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1156092" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1156092 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9230649 9230649 PRJNA1156092_P_NODE_13228_length_316_cov_0.950617_g13098_i0 PRJNA1156092 13228 316 0.950617 3.00394972 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 56.5 0.002   NTclustered gi|2381092847|gb|CP113000.1| 2202153 g13098 i0 100 1.08227848101266 30 0 9 0 1 30 1495593 1495564 MAG: Thermodesulfobacteriota bacterium isolate ORM2a chromosome, complete genome blastn 342 56.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
17614944 17614944 PRJNA1156092_P_NODE_21294_length_254_cov_2.077348_g21164_i0 PRJNA1156092 21294 254 2.077348 5.27646392 Bacteria 2 Bacteria Bacteria 353 5.65e-93   NTclustered gi|2518551120|emb|OX638332.1| 2080303 g21164 i0 91.732 147.751968503937 254 21 100 0 1 254 24129 24382 MAG: Candidatus Dadabacteria bacterium isolate 28c7ac20-cd97-4a81-9be0-f5b43b5a8d2b genome assembly, chromosome: 1 blastn 37529 353 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Candidatus Dadabacteria       Candidatus Dadabacteria bacterium
21979542 21979542 PRJNA1156092_P_NODE_18158_length_276_cov_1.482759_g18028_i0 PRJNA1156092 18158 276 1.482759 4.09241484 Desulfarculia bacterium 3065862 Bacteria Bacteria 52.8 0.025   NTclustered gi|2621701822|emb|OY759352.1| 3065862 g18028 i0 100 0.101449275362319 28 0 10 0 189 216 2529376 2529349 MAG: Desulfarculia bacterium isolate c1361fd1-6016-418c-9b2d-a8e9625d1ec5 genome assembly, chromosome: 2 blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia       Desulfarculia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;