RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1156092" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1156092 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4129922 4129922 PRJNA1156092_P_NODE_6684_length_412_cov_1.451327_g6554_i0 PRJNA1156092 6684 412 1.451327 5.97946724 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 215 4.7700000000000003e-51   NTclustered gi|698791735|ref|XM_009830598.1| 112090 g6554 i0 80.333 18.3859223300971 300 46 71 11 1 292 462 168 Aphanomyces astaci malate dehydrogenase, NAD-dependent mRNA blastn 7575 215 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
17614835 17614835 PRJNA1156092_P_NODE_12214_length_325_cov_1.928571_g12084_i0 PRJNA1156092 12214 325 1.928571 6.26785575 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 99 3.87e-16   NTclustered gi|325195237|emb|FR826032.1| 890382 g12084 i0 96.61 46.9753846153846 59 2 18 0 266 324 207 265 Albugo laibachii Nc14, genomic contig CONTIG_3119_NC14_v4_456_35141 blastn 15267 99 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
22714130 22714130 PRJNA1156092_P_NODE_21278_length_254_cov_2.546961_g21148_i0 PRJNA1156092 21278 254 2.546961 6.46928094 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 180 1.01e-40   NTclustered gi|50261276|ref|NC_005984.1| 4770 g21148 i0 83.5 79.7874015748032 200 25 77 6 59 253 10445 10249 Saprolegnia ferax mitochondrion, complete genome blastn 20266 180 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;