RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1156092" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1156092 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16880019 16880019 PRJNA1156092_P_NODE_31094_length_242_cov_0.911243_g30964_i0 PRJNA1156092 31094 242 0.911243 2.20520806 Myxococcales bacterium 2026763 Bacteria Bacteria 276 1.19e-69   NTclustered gi|2108369872|gb|CP070650.1| 2026763 g30964 i0 87.448 0.987603305785124 239 30 99 0 2 240 2642789 2642551 MAG: Myxococcales bacterium isolate bin861 chromosome blastn 239 276 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
20163587 20163587 PRJNA1156092_P_NODE_26676_length_247_cov_0.885057_g26546_i0 PRJNA1156092 26676 247 0.885057 2.18609079 Pseudomonadati 3379134 Bacteria Bacteria 110 1.31e-19   NTclustered gi|337255776|gb|CP002830.1| 35 g26546 i0 90.476 41.4291497975709 84 6 34 2 149 231 8222092 8222174 Myxococcus macrosporus strain HW-1, complete genome blastn 10233 111 0.990990990990991 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus macrosporus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;