RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1156092" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1156092 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
303045 303045 PRJNA1156092_P_NODE_8821_length_369_cov_1.222973_g8691_i0 PRJNA1156092 8821 369 1.222973 4.51277037 Cochliopodium minus 313997 Discosea other_Eukaryota 353 8.58e-93   NTclustered gi|330902862|gb|JF298257.1| 313997 g8691 i0 95.946 6.55013550135501 222 2 60 6 2 222 219 4 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 2417 353 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
1577697 1577697 PRJNA1156092_P_NODE_9342_length_360_cov_1.811847_g9212_i0 PRJNA1156092 9342 360 1.811847 6.5226492 Cochliopodium minus 313997 Discosea other_Eukaryota 593 4.519999999999998e-165   NTclustered gi|330902862|gb|JF298257.1| 313997 g9212 i0 96.409 57.4361111111111 362 8 100 5 1 360 619 261 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 20677 593 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
13056499 13056499 PRJNA1156092_P_NODE_25391_length_248_cov_0.880000_g25261_i0 PRJNA1156092 25391 248 0.88 2.1824 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 375 1.1699999999999999e-99   NTclustered gi|330902858|gb|JF298255.1| 1017091 g25261 i0 94 12.4758064516129 250 11 100 4 1 248 685 932 Cochliopodium larifeili clone 904 18S ribosomal RNA gene, partial sequence blastn 3094 375 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;