RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1151638" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1151638 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1576603 1576603 PRJNA1151638_P_NODE_5022_length_251_cov_1.752809_g4955_i0 PRJNA1151638 5022 251 1.752809 4.39955059 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 211 3.55e-50   NTclustered gi|2874253853|emb|OY969909.1| 1914239 g4955 i0 82.283 5.91235059760956 254 35 99 10 1 248 9492539 9492290 MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 blastn 1484 211 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
12515689 12515689 PRJNA1151638_P_NODE_2850_length_299_cov_1.035398_g2783_i0 PRJNA1151638 2850 299 1.035398 3.09584002 Bacteria 2 Bacteria Bacteria 71.3 7.68e-8   NTclustered gi|1712585314|gb|CP036273.1| 2528023 g2783 i0 97.561 0.989966555183946 41 1 18 0 69 109 2206261 2206221 Urbifossiella limnaea strain ETA_A1 chromosome, complete genome blastn 296 71.3 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Urbifossiella Urbifossiella limnaea
21438825 21438825 PRJNA1151638_P_NODE_1417_length_385_cov_2.407051_g1350_i0 PRJNA1151638 1417 385 2.407051 9.26714635 Pirellulales 2691354 Bacteria Bacteria 377 5.34e-100   NTclustered gi|1712647354|gb|CP036289.1| 2527984 g1350 i0 87.425 101.735064935065 334 34 86 8 1 332 2673687 2673360 Bremerella volcania strain Pan97 chromosome, complete genome blastn 39168 377 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Bremerella Bremerella volcania
24527950 24527950 PRJNA1151638_P_NODE_5340_length_249_cov_1.619318_g5273_i0 PRJNA1151638 5340 249 1.619318 4.03210182 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 137 6.0499999999999996e-28   NTclustered gi|2874253853|emb|OY969909.1| 1914239 g5273 i0 77.328 25.714859437751 247 46 97 10 1 242 4263252 4263493 MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 blastn 6403 137 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;