RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1151638" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA1151638 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16878972 16878972 PRJNA1151638_P_NODE_1474_length_379_cov_2.852941_g1407_i0 PRJNA1151638 1474 379 2.852941 10.81264639 Deinococcus maricopensis 309887 Bacteria Bacteria 296 1.51e-75   NTclustered gi|319753907|gb|CP002454.1| 709986 g1407 i0 81.218 110.707124010554 394 50 100 20 1 379 640600 640216 Deinococcus maricopensis DSM 21211, complete genome blastn 41958 296 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus maricopensis
18888495 18888495 PRJNA1151638_P_NODE_2715_length_304_cov_1.519481_g2648_i0 PRJNA1151638 2715 304 1.519481 4.61922224 Deinococcus 1298 Bacteria Bacteria 488 1.8199999999999993e-133   NTclustered gi|343199024|ref|NR_044333.1| 468913 g2648 i0 95.724 107.921052631579 304 11 99 2 1 303 629 327 Deinococcus alpinitundrae strain ME-04-04-52 16S ribosomal RNA, partial sequence blastn 32808 488 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus alpinitundrae
20703333 20703333 PRJNA1151638_P_NODE_2537_length_312_cov_1.627615_g2470_i0 PRJNA1151638 2537 312 1.627615 5.0781588 Deinococcus sp. AB2017081 3093660 Bacteria Bacteria 222 2.1e-53   NTclustered gi|2636768990|gb|CP140098.1| 3093660 g2470 i0 82.443 123.044871794872 262 38 83 8 46 303 57966 58223 Deinococcus sp. AB2017081 chromosome, complete genome blastn 38390 222 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. AB2017081

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;