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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1151638" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJNA1151638 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
301885 301885 PRJNA1151638_P_NODE_3101_length_291_cov_0.811927_g3034_i0 PRJNA1151638 3101 291 0.811927 2.36270757 Trebouxia aggregata 160068 Plants Plants 326 1.44e-84   NTclustered gi|162134340|gb|EU123979.1| 160068 g3034 i0 99.441 88.5085910652921 179 1 88 0 1 179 2194 2016 Trebouxia aggregata strain SAG 219-1d large subunit ribosomal RNA (rrl) gene, complete sequence; and putative site-specific DNA endonuclease (orf210) and hypothetical protein (orf277) genes, complete cds; chloroplast blastn 25756 326 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
2852874 2852874 PRJNA1151638_P_NODE_2723_length_303_cov_6.460870_g2656_i0 PRJNA1151638 2723 303 6.46087 19.5764361 Stichococcus bacillaris 37433 Plants Plants 326 1.51e-84   NTclustered gi|371782093|emb|HE610125.1| 37433 g2656 i0 96.447 61.9273927392739 197 7 65 0 1 197 6986 7182 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 18764 326 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
2852902 2852902 PRJNA1151638_P_NODE_3723_length_273_cov_3.385000_g3656_i0 PRJNA1151638 3723 273 3.385 9.24105 Diplosphaera sp. (in: green algae) 2911680 Plants Plants 300 8.11e-77   NTclustered gi|2644500050|gb|PP079688.1| 2911680 g3656 i0 100 77.7875457875458 162 0 59 0 1 162 1812 1973 Diplosphaera sp. (in: green algae) isolate C3 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21236 300 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Diplosphaera Diplosphaera sp. (in: green algae)
8689979 8689979 PRJNA1151638_P_NODE_1307_length_398_cov_4.015385_g1240_i0 PRJNA1151638 1307 398 4.015385 15.9812323 Trebouxia 13786 Plants Plants 730 0   NTclustered gi|1273623725|gb|KY033354.1| 285713 g1240 i0 99.749 100.417085427136 398 1 100 0 1 398 6564 6167 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 39966 730 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
9965131 9965131 PRJNA1151638_P_NODE_5888_length_246_cov_1.375723_g5821_i0 PRJNA1151638 5888 246 1.375723 3.38427858 Trebouxia 13786 Plants Plants 444 3.14e-120   NTclustered gi|255653894|gb|FJ804760.1| 53268 g5821 i0 99.187 99.3577235772358 246 2 100 0 1 246 951 706 Trebouxia arboricola strain SAG 219-1A large subunit ribosomal RNA gene, partial sequence; and hypothetical protein genes, complete cds; chloroplast blastn 24442 444 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia arboricola
10505774 10505774 PRJNA1151638_P_NODE_3709_length_274_cov_1.467662_g3642_i0 PRJNA1151638 3709 274 1.467662 4.02139388 Nannochloris normandinae 926285 Plants Plants 505 1.61e-138   NTclustered gi|922575245|gb|JQ921007.1| 926285 g3642 i0 100 96.2043795620438 273 0 99 0 2 274 814 542 Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 26360 505 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris normandinae
21438826 21438826 PRJNA1151638_P_NODE_1557_length_372_cov_7.602007_g1490_i0 PRJNA1151638 1557 372 7.602007 28.27946604 Chlorophyta 3041 Plants Plants 662 0   NTclustered gi|1523765370|gb|MK231279.1| 29647 g1490 i0 98.919 99.4435483870968 370 4 99 0 1 370 612 981 Stichococcus sp. strain KZ-5-1-1 small subunit ribosomal RNA gene, partial sequence blastn 36993 662 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;