RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1150539" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1150539 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14330347 14330347 PRJNA1150539_S_NODE_46672_length_317_cov_1.577869_g46076_i0 PRJNA1150539 46672 317 1.577869 5.00184473 Dinema validum 2704078 Euglenozoa other_Eukaryota 52.8 0.03   NTclustered gi|1803019085|gb|MT007857.1| 2704078 g46076 i0 100 0.0883280757097792 28 0 9 0 3 30 8 35 Dinema validum isolate AB2_2 small subunit ribosomal RNA gene, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Dinema Dinema validum
21438721 21438721 PRJNA1150539_S_NODE_71937_length_277_cov_1.210784_g71341_i0 PRJNA1150539 71937 277 1.210784 3.35387168 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 322 1.76e-83   NTclustered gi|2593250474|emb|OY748421.1| 5660 g71341 i0 88.214 123.787003610108 280 20 97 10 8 277 990114 989838 Leishmania braziliensis isolate MHOM/BR/75/M2904 genome assembly, chromosome: 27 blastn 34289 324 0.993827160493827 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania braziliensis
21978529 21978529 PRJNA1150539_S_NODE_81578_length_264_cov_1.471204_g80982_i0 PRJNA1150539 81578 264 1.471204 3.88397856 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 222 1.74e-53   NTclustered gi|1624748039|ref|XM_029024948.1| 67003 g80982 i0 87.179 27.7727272727273 195 25 74 0 12 206 241 435 Trypanosoma theileri 40S ribosomal protein S14 (TM35_000112390), partial mRNA blastn 7332 222 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
24527741 24527741 PRJNA1150539_S_NODE_89700_length_254_cov_1.276243_g89104_i0 PRJNA1150539 89700 254 1.276243 3.24165722 Trypanosoma melophagium 715481 Euglenozoa other_Eukaryota 52.8 0.023   NTclustered gi|2787697484|ref|XM_067336510.1| 715481 g89104 i0 100 0.110236220472441 28 0 11 0 117 144 2227 2200 Trypanosoma melophagium uncharacterized protein (LSM04_009191), partial mRNA blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma melophagium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;