RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1150539" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1150539 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4128632 4128632 PRJNA1150539_S_NODE_82644_length_262_cov_3.507937_g82048_i0 PRJNA1150539 82644 262 3.507937 9.19079494 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 326 1.2799999999999999e-84   NTclustered gi|2621707050|emb|OY764903.1| 2212468 g82048 i0 89.057 107.977099236641 265 25 99 3 1 261 3557904 3558168 MAG: Bryobacteraceae bacterium isolate d7944118-f527-4ba8-a886-cdd3ae4bc3f8 genome assembly, chromosome: 1 blastn 28290 326 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
11780409 11780409 PRJNA1150539_S_NODE_92110_length_251_cov_1.646067_g91514_i0 PRJNA1150539 92110 251 1.646067 4.13162817 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 54.7 0.006   NTclustered gi|2874253836|emb|OY969886.1| 171953 g91514 i0 96.875 0.127490039840637 32 1 13 0 216 247 2338574 2338543 MAG: uncultured Acidobacteriota bacterium isolate MFD10007.bin.c.1 genome assembly, chromosome: 1 blastn 32 54.7 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;