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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1150539" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 5 ✖

bioproject 1

  • PRJNA1150539 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7414566 7414566 PRJNA1150539_S_NODE_38486_length_333_cov_1.873077_g37890_i0 PRJNA1150539 38486 333 1.873077 6.23734641 root 1 Root_unresolved Root_unresolved 588 1.93e-163   NTclustered gi|2269803171|gb|ON421495.1| 11676 g37890 i0 100 99.1951951951952 318 0 95 0 16 333 6481 6164 HIV-1 isolate M-2B5 from France gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif) gene, complete cds; nonfunctional vpr protein (vpr) gene, complete sequence; tat protein (tat) and rev protein (rev) genes, complete cds; nonfunctional vpu protein (vpu) gene, complete sequence; envelope glycoprotein (env) gene, complete cds; and nef protein (nef) gene, partial cds blastn 33032 592 0.993243243243243 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
12515416 12515416 PRJNA1150539_S_NODE_3530_length_646_cov_8.036649_g2966_i0 PRJNA1150539 3530 646 8.036649 51.91675254 root 1 Root_unresolved Root_unresolved 1188 0   NTclustered gi|288187940|gb|GU345424.1| 11676 g2966 i0 99.845 100 646 1 100 0 1 646 1870 1225 HIV-1 isolate SQ4-319 from China pol protein (pol) gene, partial cds blastn 64600 1188 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
17614525 17614525 PRJNA1150539_S_NODE_53074_length_306_cov_1.390558_g52478_i0 PRJNA1150539 53074 306 1.390558 4.25510748 root 1 Root_unresolved Root_unresolved 566 8.239999999999998e-157   NTclustered gi|717462921|gb|KM390026.1| 11676 g52478 i0 100 99.6993464052288 306 0 100 0 1 306 5387 5082 HIV-1 clone NL43I151V from USA, complete genome blastn 30508 566 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
20702717 20702717 PRJNA1150539_S_NODE_43777_length_322_cov_3.855422_g43181_i0 PRJNA1150539 43777 322 3.855422 12.41445884 Lentivirus humimdef1 3418650 Viruses Viruses 52.8 0.03   NTclustered gi|2724777194|gb|PP677446.1| 11676 g43181 i0 94.286 0.108695652173913 35 0 11 2 231 265 781 813 HIV-1 isolate 2020LL1026 from China pol protein (pol) and gag protein (gag) genes, partial cds blastn 35 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
21438727 21438727 PRJNA1150539_S_NODE_7377_length_477_cov_6.383663_g6783_i0 PRJNA1150539 7377 477 6.383663 30.45007251 root 1 Root_unresolved Root_unresolved 881 0   NTclustered gi|717462921|gb|KM390026.1| 11676 g6783 i0 100 99.8658280922432 477 0 100 0 1 477 6637 6161 HIV-1 clone NL43I151V from USA, complete genome blastn 47636 881 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;