RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1150539" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1150539 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1575984 1575984 PRJNA1150539_S_NODE_49302_length_312_cov_3.175732_g48706_i0 PRJNA1150539 49302 312 3.175732 9.90828384 Rhodopirellula sp. P2 2127060 Bacteria Bacteria 52.8 0.029   NTclustered gi|2447573959|gb|CP118225.1| 2127060 g48706 i0 100 0.0897435897435897 28 0 9 0 205 232 5896694 5896667 Rhodopirellula sp. P2 chromosome, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Rhodopirellula Rhodopirellula sp. P2
19427093 19427093 PRJNA1150539_S_NODE_12736_length_417_cov_3.011628_g12141_i0 PRJNA1150539 12736 417 3.011628 12.55848876 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 726 0   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g12141 i0 98.082 71.9808153477218 417 8 100 0 1 417 3556264 3556680 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 30016 726 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
21977796 21977796 PRJNA1150539_S_NODE_14198_length_408_cov_3.611940_g13603_i0 PRJNA1150539 14198 408 3.61194 14.7367152 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 673 0   NTclustered gi|226525288|gb|FJ872373.1| 156588 g13603 i0 96.552 137.720588235294 406 14 99 0 3 408 15824 15419 Uncultured Verrucomicrobia bacterium clone 118 genomic sequence blastn 56190 673 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;