RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1148190" and tax_phylum = "Xenacoelomorpha"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Xenacoelomorpha · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1148190 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9227425 9227425 PRJNA1148190_P_NODE_724828_length_244_cov_0.900585_g713655_i0 PRJNA1148190 724828 244 0.900585 2.1974274 Symsagittifera roscoffensis 84072 Xenacoelomorpha other_Eukaryota 80.5 1.01e-10   NTclustered gi|2701355790|ref|XM_063863407.1| 84072 g713655 i0 92.727 3.44672131147541 55 4 23 0 143 197 1253 1307 PREDICTED: Symsagittifera roscoffensis zygotic DNA replication licensing factor mcm3-like (LOC134846167), mRNA blastn 841 80.5 1 Eukaryota Opisthokonta Metazoa Xenacoelomorpha   Acoela Sagittiferidae Symsagittifera Symsagittifera roscoffensis
14326701 14326701 PRJNA1148190_P_NODE_58912_length_751_cov_2.589971_g47938_i0 PRJNA1148190 58912 751 2.589971 19.45068221 Symsagittifera roscoffensis 84072 Xenacoelomorpha other_Eukaryota 71.3 2.08e-7   NTclustered gi|2701357608|ref|XM_063864378.1| 84072 g47938 i0 93.75 0.119840213049268 48 1 6 2 460 507 369 324 PREDICTED: Symsagittifera roscoffensis kinesin-II 95 kDa subunit-like (LOC134846937), mRNA blastn 90 71.3 1 Eukaryota Opisthokonta Metazoa Xenacoelomorpha   Acoela Sagittiferidae Symsagittifera Symsagittifera roscoffensis
23250010 23250010 PRJNA1148190_P_NODE_587679_length_251_cov_0.865169_g576506_i0 PRJNA1148190 587679 251 0.865169 2.17157419 Symsagittifera roscoffensis 84072 Xenacoelomorpha other_Eukaryota 63.9 1.05e-5   NTclustered gi|2701348614|ref|XM_063859652.1| 84072 g576506 i0 100 5 34 0 14 0 130 163 841 808 PREDICTED: Symsagittifera roscoffensis E3 ubiquitin-protein ligase MARCHF6-like (LOC134843544), mRNA blastn 1255 63.9 1 Eukaryota Opisthokonta Metazoa Xenacoelomorpha   Acoela Sagittiferidae Symsagittifera Symsagittifera roscoffensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;