RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1148190" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1148190 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2844493 2844493 PRJNA1148190_P_NODE_292263_length_323_cov_1.240000_g281090_i0 PRJNA1148190 292263 323 1.24 4.0052 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 409 1.56e-109   NTclustered gi|62910949|gb|AY925001.1| 5778 g281090 i0 95.669 0.91640866873065 254 11 79 0 1 254 254 1 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 296 409 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6677965 6677965 PRJNA1148190_P_NODE_778146_length_241_cov_0.916667_g766973_i0 PRJNA1148190 778146 241 0.916667 2.20916747 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 368 1.9e-97   NTclustered gi|421976335|gb|JQ519484.1| 5778 g766973 i0 94.191 58.4439834024896 241 14 100 0 1 241 468 228 Vermamoeba vermiformis clone JGHverm1 beta-tubulin gene, partial cds blastn 14085 368 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10504098 10504098 PRJNA1148190_P_NODE_795049_length_237_cov_2.542683_g783876_i0 PRJNA1148190 795049 237 2.542683 6.02615871 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 399 6.589999999999999e-107   NTclustered gi|423292048|gb|JQ519470.1| 5778 g783876 i0 97.046 91.2784810126582 237 7 100 0 1 237 651 415 Vermamoeba vermiformis clone JG10.132_b5 alpha tubulin gene, partial cds blastn 21633 399 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23250938 23250938 PRJNA1148190_P_NODE_663699_length_247_cov_0.885057_g652526_i0 PRJNA1148190 663699 247 0.885057 2.18609079 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 412 8.89e-111   NTclustered gi|62910949|gb|AY925001.1| 5778 g652526 i0 96.761 2.27935222672065 247 8 100 0 1 247 498 744 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 563 412 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;