RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1148190" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1148190 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1571286 1571286 PRJNA1148190_P_NODE_513302_length_264_cov_1.356021_g502129_i0 PRJNA1148190 513302 264 1.356021 3.57989544 Roseithermus sacchariphilus 2893045 Bacteria Bacteria 178 3.81e-40   NTclustered gi|1417721500|gb|CP030158.1| 2893045 g502129 i0 85.632 7.49242424242424 174 19 65 6 92 262 4438145 4438315 Roseithermus sacchariphilus strain MEBiC09517 chromosome, complete genome blastn 1978 178 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salisaetaceae Roseithermus Roseithermus sacchariphilus
12512943 12512943 PRJNA1148190_P_NODE_206950_length_371_cov_1.463087_g195780_i0 PRJNA1148190 206950 371 1.463087 5.42805277 root 1 Root_unresolved Root_unresolved 71.3 9.74e-8   NTclustered gi|2844596544|gb|CP172416.1| 29549 g195780 i0 97.561 11.5256064690027 41 1 11 0 331 371 1790197 1790237 Rhodothermus marinus strain ISCAR-493 chromosome blastn 4276 71.3 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus
16338029 16338029 PRJNA1148190_P_NODE_54853_length_792_cov_1.663421_g43953_i0 PRJNA1148190 54853 792 1.663421 13.17429432 Rhodothermales 1853224 Bacteria Bacteria 102 7.78e-17   NTclustered gi|1778174558|dbj|AP019796.1| 29549 g43953 i0 98.276 7.1540404040404 58 1 7 0 1 58 1314813 1314870 Rhodothermus marinus AA2-13 DNA, complete genome blastn 5666 102 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus
16873323 16873323 PRJNA1148190_P_NODE_482114_length_270_cov_1.385787_g470941_i0 PRJNA1148190 482114 270 1.385787 3.7416249 Rhodothermus marinus 29549 Bacteria Bacteria 176 1.41e-39   NTclustered gi|1778174558|dbj|AP019796.1| 29549 g470941 i0 80.426 12.3518518518519 235 42 86 2 36 268 3034694 3034926 Rhodothermus marinus AA2-13 DNA, complete genome blastn 3335 176 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus
20698906 20698906 PRJNA1148190_P_NODE_565497_length_254_cov_1.364641_g554324_i0 PRJNA1148190 565497 254 1.364641 3.46618814 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 130 1.04e-25   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g554324 i0 76.172 1.00787401574803 256 55 99 6 2 254 132500 132752 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 256 130 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
23988020 23988020 PRJNA1148190_P_NODE_585579_length_251_cov_0.865169_g574406_i0 PRJNA1148190 585579 251 0.865169 2.17157419 Rhodothermales 1853224 Bacteria Bacteria 65.8 2.92e-6   NTclustered gi|1167574847|gb|CP020382.1| 1779382 g574406 i0 100 0.278884462151394 35 0 14 0 6 40 3397118 3397152 Rhodothermaceae bacterium RA chromosome, complete genome blastn 70 65.8 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium RA
24526149 24526149 PRJNA1148190_P_NODE_789940_length_241_cov_0.916667_g778767_i0 PRJNA1148190 789940 241 0.916667 2.20916747 Rhodothermaceae bacterium RA 1779382 Bacteria Bacteria 56.5 0.002   NTclustered gi|1167574847|gb|CP020382.1| 1779382 g778767 i0 100 0.12448132780083 30 0 12 0 59 88 365698 365669 Rhodothermaceae bacterium RA chromosome, complete genome blastn 30 56.5 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium RA

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;