RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1148190" and tax_phylum = "Pisuviricota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Pisuviricota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1148190 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9226684 9226684 PRJNA1148190_P_NODE_664288_length_247_cov_0.885057_g653115_i0 PRJNA1148190 664288 247 0.885057 2.18609079 Betacoronavirus pandemicum 3418604 Viruses Viruses 71.3 6.16e-8   NTclustered gi|2155043488|emb|OV016109.1| 2697049 g653115 i0 92.157 41.8016194331984 51 2 20 2 198 247 30013 30062 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 10325 71.3 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
15596151 15596151 PRJNA1148190_P_NODE_275153_length_331_cov_1.193798_g263982_i0 PRJNA1148190 275153 331 1.193798 3.95147138 Betacoronavirus pandemicum 3418604 Viruses Viruses 82.4 3.98e-11   NTclustered gi|2165837707|emb|OV197600.1| 2697049 g263982 i0 87.342 33.5407854984894 79 0 22 6 259 331 29911 29985 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 11102 82.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
19419495 19419495 PRJNA1148190_P_NODE_28236_length_1358_cov_4.629572_g18826_i0 PRJNA1148190 28236 1358 4.629572 62.86958776 Betacoronavirus pandemicum 3418604 Viruses Viruses 75 2.97e-8   NTclustered gi|2155043488|emb|OV016109.1| 2697049 g18826 i0 86.486 7.92857142857143 74 2 5 3 1 67 30062 29990 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 10767 75 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
23248724 23248724 PRJNA1148190_P_NODE_489219_length_269_cov_1.066327_g478046_i0 PRJNA1148190 489219 269 1.066327 2.86841963 Betacoronavirus pandemicum 3418604 Viruses Viruses 62.1 4.09e-5   NTclustered gi|2165837707|emb|OV197600.1| 2697049 g478046 i0 100 37.6096654275093 33 0 12 0 1 33 29985 29953 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 10117 62.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
23249044 23249044 PRJNA1148190_P_NODE_513879_length_264_cov_1.246073_g502706_i0 PRJNA1148190 513879 264 1.246073 3.28963272 Betacoronavirus pandemicum 3418604 Viruses Viruses 86.1 2.38e-12   NTclustered gi|2155043488|emb|OV016109.1| 2697049 g502706 i0 91.935 32.0795454545455 62 3 23 2 204 264 30000 30060 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 8469 86.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
24520884 24520884 PRJNA1148190_P_NODE_385600_length_289_cov_1.379630_g374427_i0 PRJNA1148190 385600 289 1.37963 3.9871307 Betacoronavirus pandemicum 3418604 Viruses Viruses 75 5.71e-9   NTclustered gi|2155043488|emb|OV016109.1| 2697049 g374427 i0 88.889 37.4152249134948 63 3 21 4 1 62 30062 30003 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 10813 75 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;