RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1148190" and tax_phylum = "Negarnaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1148190 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9224498 9224498 PRJNA1148190_P_NODE_495768_length_267_cov_1.876289_g484595_i0 PRJNA1148190 495768 267 1.876289 5.00969163 Mobatvirus xuansonense 3052339 Viruses Viruses 52.8 0.024   NTclustered gi|1594662948|gb|MK393929.1| 3052339 g484595 i0 100 0.104868913857678 28 0 10 0 70 97 1382 1355 Mobatvirus xuansonense strain VN4201B87 nucleocapsid gene, complete cds blastn 28 52.8 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Elliovirales Hantaviridae Mobatvirus Mobatvirus xuansonense
9226943 9226943 PRJNA1148190_P_NODE_68528_length_676_cov_2.160862_g57456_i0 PRJNA1148190 68528 676 2.160862 14.60742712 Zebrafish influenza B-like virus RQ01 Viruses Viruses 54.7 0.019   NTclustered gi|407228952|gb|JX566145.1| RQ01 g57456 i0 96.97 0.0488165680473373 33 0 5 1 618 649 1159 1127 Influenza A virus (A/mallard/Sweden/99847/2009(H6N2)) segment 5 nucleocapsid protein (NP) gene, partial cds blastn 33 54.7 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Zebrafish influenza B-like virus
10500519 10500519 PRJNA1148190_P_NODE_517449_length_263_cov_1.536842_g506276_i0 PRJNA1148190 517449 263 1.536842 4.04189446 Mammarenavirus choriomeningitidis 3052303 Viruses Viruses 56.5 0.002   NTclustered gi|2104471869|gb|MZ568451.1| 3052303 g506276 i0 100 0.114068441064639 30 0 11 0 44 73 190 219 Lymphocytic choriomeningitis mammarenavirus isolate S23_BUS RNA-dependent RNA polymerase (L) gene, partial cds blastn 30 56.5 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Arenaviridae Mammarenavirus Mammarenavirus choriomeningitidis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;