RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1148190" and tax_phylum = "Minisyncoccota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1148190 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15601713 15601713 PRJNA1148190_P_NODE_683133_length_246_cov_0.890173_g671960_i0 PRJNA1148190 683133 246 0.890173 2.18982558 Minisyncoccota bacterium 2053589 Bacteria Bacteria 100 7.82e-17   NTclustered gi|2556886971|gb|CP129473.1| 2053589 g671960 i0 88.889 6.17073170731707 81 9 33 0 136 216 347805 347885 MAG: Candidatus Paceibacterota bacterium isolate cMAG.23 chromosome, complete genome blastn 1518 100 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
16873108 16873108 PRJNA1148190_P_NODE_466094_length_273_cov_1.520000_g454921_i0 PRJNA1148190 466094 273 1.52 4.1496 Candidatus Phycocordibacter aenigmaticus 1948796 Bacteria Bacteria 189 1.83e-43   NTclustered gi|2862534145|gb|CP174359.1| 1948796 g454921 i0 79.63 0.989010989010989 270 49 98 5 1 267 595295 595561 MAG: Patescibacteria group bacterium UBA2163 chromosome, complete genome blastn 270 189 1 Bacteria Bacteria candidate phyla   Minisyncoccota Minisyncoccia Candidatus Phycocordibacterales Candidatus Phycocordibacteraceae Candidatus Phycocordibacter Candidatus Phycocordibacter aenigmaticus
18143674 18143674 PRJNA1148190_P_NODE_191415_length_383_cov_2.609677_g180245_i0 PRJNA1148190 191415 383 2.609677 9.99506291 Minisyncoccota bacterium 2053589 Bacteria Bacteria 337 9.01e-88   NTclustered gi|2556886971|gb|CP129473.1| 2053589 g180245 i0 83.562 98.3342036553525 365 54 94 5 5 365 441674 441312 MAG: Candidatus Paceibacterota bacterium isolate cMAG.23 chromosome, complete genome blastn 37662 337 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;