RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1148190" and tax_phylum = "Hemichordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1148190 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11770155 11770155 PRJNA1148190_P_NODE_162130_length_413_cov_2.308824_g150963_i0 PRJNA1148190 162130 413 2.308824 9.53544312 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 60.2 2.37e-4   NTclustered gi|585642413|ref|XM_006811114.1| 10224 g150963 i0 94.737 0.0920096852300242 38 2 9 0 121 158 124 161 PREDICTED: Saccoglossus kowalevskii DNA annealing helicase and endonuclease ZRANB3-like (LOC102803512), mRNA blastn 38 60.2 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
18145528 18145528 PRJNA1148190_P_NODE_308055_length_316_cov_1.893004_g296882_i0 PRJNA1148190 308055 316 1.893004 5.98189264 Ptychodera flava 63121 Hemichordata other_Eukaryota 69.4 2.94e-7   NTclustered gi|2875754565|ref|XM_070707609.1| 63121 g296882 i0 90.566 0.503164556962025 53 3 16 2 147 198 886 937 PREDICTED: Ptychodera flava cytosolic carboxypeptidase 6-like (LOC139138964), transcript variant X1, mRNA blastn 159 69.4 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
18148470 18148470 PRJNA1148190_P_NODE_514215_length_264_cov_1.209424_g503042_i0 PRJNA1148190 514215 264 1.209424 3.19287936 Ptychodera flava 63121 Hemichordata other_Eukaryota 54.7 0.007   NTclustered gi|2875701804|ref|XM_070697011.1| 63121 g503042 i0 100 0.988636363636364 29 0 11 0 26 54 137 109 PREDICTED: Ptychodera flava dynein axonemal intermediate chain 7-like (LOC139131057), transcript variant X3, mRNA blastn 261 54.7 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
24526601 24526601 PRJNA1148190_P_NODE_90240_length_568_cov_1.274747_g79103_i0 PRJNA1148190 90240 568 1.274747 7.24056296 Ptychodera flava 63121 Hemichordata other_Eukaryota 56.5 0.004   NTclustered gi|2875731696|ref|XR_011551990.1| 63121 g79103 i0 90.476 0.147887323943662 42 4 7 0 106 147 465 424 PREDICTED: Ptychodera flava chromosome-associated kinesin KIF4-like (LOC139130821), transcript variant X2, misc_RNA blastn 84 56.5 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;