RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1148190" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1148190 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6672844 6672844 PRJNA1148190_P_NODE_387906_length_289_cov_1.023148_g376733_i0 PRJNA1148190 387906 289 1.023148 2.95689772 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 219 2.49e-52   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g376733 i0 80.556 21.9515570934256 288 52 99 4 1 286 397006 397291 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 6344 219 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
24525416 24525416 PRJNA1148190_P_NODE_730920_length_244_cov_0.900585_g719747_i0 PRJNA1148190 730920 244 0.900585 2.1974274 Fibrobacterota bacterium 2052160 Bacteria Bacteria 335 1.9499999999999992e-87   NTclustered gi|1958056460|gb|CP064986.1| 2052160 g719747 i0 91.393 19.983606557377 244 21 100 0 1 244 4125980 4126223 Fibrobacteres bacterium isolate Fred_18-Q3-R57-64_MAXAC.109_cln chromosome, complete genome blastn 4876 335 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;