RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1148190" and tax_phylum = "Elusimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Elusimicrobiota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1148190 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5398458 5398458 PRJNA1148190_P_NODE_411485_length_284_cov_1.303318_g400312_i0 PRJNA1148190 411485 284 1.303318 3.70142312 Elusimicrobiota bacterium 2030800 Bacteria Bacteria 185 2.4799999999999993e-42   NTclustered gi|2233025045|gb|CP096137.1| 2030800 g400312 i0 79.038 45.9683098591549 291 45 99 13 2 284 2453000 2452718 MAG: Elusimicrobia bacterium isolate JAD_PAG50586_1 chromosome, complete genome blastn 13055 185 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobiota bacterium
5401773 5401773 PRJNA1148190_P_NODE_662625_length_247_cov_0.885057_g651452_i0 PRJNA1148190 662625 247 0.885057 2.18609079 Elusimicrobiota bacterium 2030800 Bacteria Bacteria 89.8 1.7e-13   NTclustered gi|2233025045|gb|CP096137.1| 2030800 g651452 i0 87.179 42.6558704453441 78 10 32 0 166 243 3535455 3535532 MAG: Elusimicrobia bacterium isolate JAD_PAG50586_1 chromosome, complete genome blastn 10536 89.8 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobiota bacterium
9224124 9224124 PRJNA1148190_P_NODE_467288_length_273_cov_1.300000_g456115_i0 PRJNA1148190 467288 273 1.3 3.549 Elusimicrobium minutum 423605 Bacteria Bacteria 52.8 0.025   NTclustered gi|186970583|gb|CP001055.1| 445932 g456115 i0 100 0.102564102564103 28 0 10 0 99 126 1326694 1326721 Elusimicrobium minutum Pei191, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Elusimicrobiota Elusimicrobia Elusimicrobiales Elusimicrobiaceae Elusimicrobium Elusimicrobium minutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;