RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1148190" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1148190 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1572338 1572338 PRJNA1148190_P_NODE_593482_length_251_cov_0.865169_g582309_i0 PRJNA1148190 593482 251 0.865169 2.17157419 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 65.8 2.92e-6   NTclustered gi|470506990|ref|XM_004367506.1| 1257118 g582309 i0 89.091 0.219123505976096 55 3 21 2 112 163 2641 2695 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_252520), partial mRNA blastn 55 65.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
2849656 2849656 PRJNA1148190_P_NODE_670343_length_247_cov_0.885057_g659170_i0 PRJNA1148190 670343 247 0.885057 2.18609079 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 62.1 3.71e-5   NTclustered gi|470390235|ref|XM_004334510.1| 1257118 g659170 i0 94.872 3.42105263157895 39 2 16 0 86 124 4568 4606 Acanthamoeba castellanii str. Neff serine/threonine protein kinase (ACA1_157080), partial mRNA blastn 845 62.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14324081 14324081 PRJNA1148190_P_NODE_402312_length_286_cov_1.159624_g391139_i0 PRJNA1148190 402312 286 1.159624 3.31652464 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 54.7 0.007   NTclustered gi|470411960|ref|XM_004336374.1| 1257118 g391139 i0 100 0.101398601398601 29 0 10 0 131 159 486 514 Acanthamoeba castellanii str. Neff pantoate-beta-alanine ligase (ACA1_380860), partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18147181 18147181 PRJNA1148190_P_NODE_420715_length_282_cov_1.440191_g409542_i0 PRJNA1148190 420715 282 1.440191 4.06133862 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 52.8 0.026   NTclustered gi|470392527|ref|XM_004334728.1| 1257118 g409542 i0 100 0.099290780141844 28 0 10 0 83 110 1017 990 Acanthamoeba castellanii str. Neff serine/threonine kinase (ACA1_092980), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19423148 19423148 PRJNA1148190_P_NODE_532676_length_260_cov_1.636364_g521503_i0 PRJNA1148190 532676 260 1.636364 4.2545464 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 255 1.68e-63   NTclustered gi|909719694|gb|KT185628.1| 5755 g521503 i0 91.005 4.50384615384615 189 17 73 0 72 260 20328 20516 Acanthamoeba castellanii isolate BCP-EM3VF21-1 mitochondrion, complete genome blastn 1171 255 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24521955 24521955 PRJNA1148190_P_NODE_46140_length_904_cov_1.558363_g35472_i0 PRJNA1148190 46140 904 1.558363 14.08760152 Paravannella minima 1443144 Discosea other_Eukaryota 135 8.810000000000001e-27   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g35472 i0 76.866 21.2411504424779 268 44 29 13 82 339 3759 3500 Paravannella minima mitochondrion, complete genome blastn 19202 135 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;