RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1148190" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1148190 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4119437 4119437 PRJNA1148190_P_NODE_221044_length_361_cov_1.069444_g209874_i0 PRJNA1148190 221044 361 1.069444 3.86069284 Polychytrium aggregatum 110093 Fungi Fungi 130 1.54e-25   NTclustered gi|2432162630|ref|XM_053112000.1| 110093 g209874 i0 90 1.74238227146814 100 10 28 0 262 361 514 415 Polychytrium aggregatum ribosomal protein L22/L17 (BJ171DRAFT_515986), mRNA blastn 629 130 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
6678309 6678309 PRJNA1148190_P_NODE_805486_length_227_cov_2.649351_g794313_i0 PRJNA1148190 805486 227 2.649351 6.01402677 Batrachochytrium dendrobatidis 109871 Fungi Fungi 102 1.98e-17   NTclustered gi|2897836978|gb|CP161927.1| 109871 g794313 i0 89.873 1.21145374449339 79 8 35 0 20 98 686177 686099 Batrachochytrium dendrobatidis strain JEL423 chromosome 5 blastn 275 102 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis
11778229 11778229 PRJNA1148190_P_NODE_740770_length_243_cov_0.905882_g729597_i0 PRJNA1148190 740770 243 0.905882 2.20129326 Polychytrium aggregatum 110093 Fungi Fungi 71.3 6.05e-8   NTclustered gi|2432173666|ref|XM_053107885.1| 110093 g729597 i0 86.154 0.559670781893004 65 9 27 0 43 107 953 889 Polychytrium aggregatum nife hydrogenase-like protein (BJ171DRAFT_430063), partial mRNA blastn 136 71.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
21972208 21972208 PRJNA1148190_P_NODE_420158_length_282_cov_1.473684_g408985_i0 PRJNA1148190 420158 282 1.473684 4.15578888 Piromyces sp. 45796 Fungi Fungi 521 1.6499999999999996e-143   NTclustered gi|1388116266|gb|MH043820.1| 45796 g408985 i0 100 87.1099290780142 282 0 100 0 1 282 205 486 Piromyces sp. strain B5 Glycosyl hydrolase family 43 mRNA, partial cds blastn 24565 521 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Piromyces Piromyces sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;