RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1146366" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1146366 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7411570 7411570 PRJNA1146366_S_NODE_1986_length_261_cov_1.069149_g1983_i0 PRJNA1146366 1986 261 1.069149 2.79047889 Providencia 586 Bacteria Bacteria 466 7.17e-127   NTclustered gi|1356799678|gb|CP027418.1| 587 g1983 i0 98.855 687.505747126437 262 2 100 1 1 261 433242 432981 Providencia rettgeri strain FDAARGOS_330 chromosome, complete genome blastn 179439 466 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia rettgeri
24516210 24516210 PRJNA1146366_S_NODE_1540_length_284_cov_1.478673_g1537_i0 PRJNA1146366 1540 284 1.478673 4.19943132 Ralstonia pickettii 329 Bacteria Bacteria 520 5.98e-143   NTclustered gi|2556944802|gb|CP104381.1| 329 g1537 i0 99.648 84.8767605633803 284 1 100 0 1 284 2042843 2042560 Ralstonia pickettii strain MCR chromosome 1, complete sequence blastn 24105 520 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia pickettii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;