RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1146366" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1146366 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
290298 290298 PRJNA1146366_S_NODE_1641_length_278_cov_1.517073_g1638_i0 PRJNA1146366 1641 278 1.517073 4.21746294 Ovis aries 9940 Chordata Chordata 154 6.82e-33   NTclustered gi|199945614|gb|FJ042940.1| 9940 g1638 i0 89.431 45.6834532374101 123 12 44 1 72 193 34254 34132 Ovis aries APOBEC3A (APOBEC3A) gene, complete cds; APOBEC3F (APOBEC3F) gene, complete cds, alternatively spliced; and CBX7 gene, complete sequence blastn 12700 154 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis aries
18142034 18142034 PRJNA1146366_S_NODE_2315_length_247_cov_2.839080_g2312_i0 PRJNA1146366 2315 247 2.83908 7.0125276 Hyla sarda 327740 Chordata Chordata 52.8 0.022   NTclustered gi|2512226893|ref|XM_056533279.1| 327740 g2312 i0 100 0.11336032388664 28 0 11 0 1 28 464 437 PREDICTED: Hyla sarda CLN3 lysosomal/endosomal transmembrane protein, battenin (CLN3), transcript variant X1, mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda
20691796 20691796 PRJNA1146366_S_NODE_1097_length_315_cov_1.834711_g1094_i0 PRJNA1146366 1097 315 1.834711 5.77933965 Erpetoichthys calabaricus 27687 Chordata Chordata 211 4.6e-50   NTclustered gi|2327581580|ref|XM_051922993.1| 27687 g1094 i0 79.341 7.48571428571429 334 43 99 16 2 315 1284 957 PREDICTED: Erpetoichthys calabaricus E3 SUMO-protein ligase ZBED1-like (LOC127526706), mRNA blastn 2358 211 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
20691808 20691808 PRJNA1146366_S_NODE_2397_length_244_cov_4.514620_g2394_i0 PRJNA1146366 2397 244 4.51462 11.0156728 Meles meles 9662 Chordata Chordata 54.7 0.006   NTclustered gi|1190059416|emb|LT800002.1| 9662 g2394 i0 100 0.463114754098361 29 0 12 0 1 29 30 58 Meles meles mRNA for Enzyme (Glyceraldehyde 3-phosphate dehydrogenase gene) blastn 113 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Meles Meles meles

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;