contig_metadata
7 rows where analysis = "blastn", bioproject = "PRJNA1146366" and tax_phylum = "Bacillota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2841128 | 2841128 | PRJNA1146366_S_NODE_2263_length_249_cov_2.181818_g2260_i0 | PRJNA1146366 | 2263 | 249 | 2.181818 | 5.43272682 | Staphylococcus auricularis | 29379 | Bacteria | Bacteria | 460 | 3.16e-125 | NTclustered | gi|1403688813|emb|LS483491.1| | 29379 | g2260 | i0 | 100 | 479.618473895582 | 249 | 0 | 100 | 0 | 1 | 249 | 1486313 | 1486065 | Staphylococcus auricularis strain NCTC12101 genome assembly, chromosome: 1 | blastn | 119425 | 460 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus auricularis | ||
| 8686806 | 8686806 | PRJNA1146366_S_NODE_1187_length_307_cov_3.628205_g1184_i0 | PRJNA1146366 | 1187 | 307 | 3.628205 | 11.13858935 | Staphylococcus | 1279 | Bacteria | Bacteria | 568 | 2.3e-157 | NTclustered | gi|2071692135|gb|CP073824.1| | 1282 | g1184 | i0 | 100 | 100 | 307 | 0 | 100 | 0 | 1 | 307 | 180852 | 180546 | Staphylococcus epidermidis strain B1200599 chromosome, complete genome | blastn | 30700 | 568 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus epidermidis | ||
| 8686807 | 8686807 | PRJNA1146366_S_NODE_427_length_401_cov_2.192073_g424_i0 | PRJNA1146366 | 427 | 401 | 2.192073 | 8.79021273 | Streptococcus | 1301 | Bacteria | Bacteria | 728 | 0 | NTclustered | gi|2886508907|emb|OZ217344.1| | 28037 | g424 | i0 | 99.501 | 100.980049875312 | 401 | 1 | 100 | 1 | 1 | 401 | 1190840 | 1191239 | Streptococcus mitis isolate S. mitis E22 genome assembly, chromosome: 1 | blastn | 40493 | 728 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus mitis | ||
| 9218333 | 9218333 | PRJNA1146366_S_NODE_648_length_363_cov_2.817241_g645_i0 | PRJNA1146366 | 648 | 363 | 2.817241 | 10.22658483 | Finegoldia magna | 1260 | Bacteria | Bacteria | 671 | 0 | NTclustered | gi|2831269597|gb|CP170999.1| | 1260 | g645 | i0 | 100 | 6.08264462809917 | 363 | 0 | 100 | 0 | 1 | 363 | 966697 | 966335 | Finegoldia magna strain WGS1513 chromosome, complete genome | blastn | 2208 | 671 | 1 | Bacteria | Bacillati | Bacillota | Tissierellia | Tissierellales | Peptoniphilaceae | Finegoldia | Finegoldia magna | ||
| 9961806 | 9961806 | PRJNA1146366_S_NODE_768_length_348_cov_1.850909_g765_i0 | PRJNA1146366 | 768 | 348 | 1.850909 | 6.44116332 | Paenibacillus | 44249 | Bacteria | Bacteria | 368 | 2.88e-97 | NTclustered | gi|1373996327|gb|CP028366.1| | 59843 | g765 | i0 | 98.558 | 533.206896551724 | 208 | 3 | 60 | 0 | 1 | 208 | 422957 | 422750 | Paenibacillus glucanolyticus strain W10507 chromosome | blastn | 185556 | 368 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Paenibacillaceae | Paenibacillus | Paenibacillus glucanolyticus | ||
| 18142027 | 18142027 | PRJNA1146366_S_NODE_1355_length_296_cov_2.394619_g1352_i0 | PRJNA1146366 | 1355 | 296 | 2.394619 | 7.08807224 | Dolosigranulum pigrum | 29394 | Bacteria | Bacteria | 547 | 2.8799999999999986e-151 | NTclustered | gi|2020681836|gb|CP040413.1| | 29394 | g1352 | i0 | 100 | 469.341216216216 | 296 | 0 | 100 | 0 | 1 | 296 | 1791826 | 1791531 | Dolosigranulum pigrum strain KPL3246 chromosome, complete genome | blastn | 138925 | 547 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Carnobacteriaceae | Dolosigranulum | Dolosigranulum pigrum | ||
| 21967150 | 21967150 | PRJNA1146366_S_NODE_2498_length_241_cov_2.321429_g2495_i0 | PRJNA1146366 | 2498 | 241 | 2.321429 | 5.59464389 | Anaerococcus nagyae | 1755241 | Bacteria | Bacteria | 446 | 8.519999999999999e-121 | NTclustered | gi|2722731751|dbj|AP031484.1| | 1755241 | g2495 | i0 | 100 | 5.21991701244813 | 241 | 0 | 100 | 0 | 1 | 241 | 1033952 | 1033712 | Anaerococcus nagyae NBRC 113824 DNA, complete genome: sequence1 | blastn | 1258 | 446 | 1 | Bacteria | Bacillati | Bacillota | Tissierellia | Tissierellales | Peptoniphilaceae | Anaerococcus | Anaerococcus nagyae |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;