RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1146366" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1146366 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1564927 1564927 PRJNA1146366_S_NODE_1562_length_282_cov_5.052632_g1559_i0 PRJNA1146366 1562 282 5.052632 14.24842224 Linepithema humile 83485 Arthropoda Arthropoda 516 7.67e-142   NTclustered gi|2788968684|ref|XM_012376419.2| 83485 g1559 i0 99.645 8.44326241134752 282 1 100 0 1 282 809 528 PREDICTED: Linepithema humile type VI secretion system spike protein VgrG1b (LOC105677662), mRNA blastn 2381 516 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hymenoptera Formicidae Linepithema Linepithema humile
11236950 11236950 PRJNA1146366_S_NODE_569_length_375_cov_1.529801_g566_i0 PRJNA1146366 569 375 1.529801 5.73675375 Timema 61471 Arthropoda Arthropoda 54.7 0.01   NTclustered gi|1947819235|emb|OD566261.1| 61472 g566 i0 100 0.154666666666667 29 0 8 0 240 268 111505 111477 4_Tbi_b3v08 blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Phasmatodea Timematidae Timema Timema bartmani
15593190 15593190 PRJNA1146366_S_NODE_2973_length_207_cov_4.320896_g2970_i0 PRJNA1146366 2973 207 4.320896 8.94425472 Macdunnoughia confusa 254380 Arthropoda Arthropoda 52.8 0.018   NTclustered gi|2917930536|emb|OZ234942.1| 254380 g2970 i0 100 0.135265700483092 28 0 14 0 52 79 12172516 12172489 Macdunnoughia confusa genome assembly, chromosome: 16 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Lepidoptera Noctuidae Macdunnoughia Macdunnoughia confusa
16867429 16867429 PRJNA1146366_S_NODE_714_length_354_cov_4.056940_g711_i0 PRJNA1146366 714 354 4.05694 14.3615676 Medioppia subpectinata 1979941 Arthropoda Arthropoda 54.7 0.009   NTclustered gi|1963617327|emb|OC873114.1| 1979941 g711 i0 100 0.0819209039548023 29 0 8 0 184 212 1610 1638 Medioppia subpectinata blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Sarcoptiformes Oppiidae Medioppia Medioppia subpectinata
18142037 18142037 PRJNA1146366_S_NODE_315_length_433_cov_3.247222_g312_i0 PRJNA1146366 315 433 3.247222 14.06047126 Timema californicum 61474 Arthropoda Arthropoda 56.5 0.003   NTclustered gi|1965181363|emb|OE475415.1| 61474 g312 i0 90.909 0.10161662817552 44 1 9 2 328 368 266 309 2_Tcm_b3v08 blastn 44 56.5 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Phasmatodea Timematidae Timema Timema californicum
24516222 24516222 PRJNA1146366_S_NODE_420_length_403_cov_5.300000_g417_i0 PRJNA1146366 420 403 5.3 21.359 Diuraphis noxia 143948 Arthropoda Arthropoda 56.5 0.003   NTclustered gi|985399333|ref|XM_015511795.1| 143948 g417 i0 100 3.4317617866005 30 0 7 0 147 176 868 839 PREDICTED: Diuraphis noxia protein grainyhead (LOC107164101), mRNA blastn 1383 56.5 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hemiptera Aphididae Diuraphis Diuraphis noxia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;