RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1146029" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1146029 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6136442 6136442 PRJNA1146029_P_NODE_10265_length_289_cov_0.856481_g9984_i0 PRJNA1146029 10265 289 0.856481 2.47523009 Thermodesulfobacteriota 200940 Bacteria Bacteria 518 2.19e-142   NTclustered gi|779731694|gb|CP010430.1| 35554 g9984 i0 98.962 17 289 3 100 0 1 289 3978777 3978489 Geobacter sulfurreducens strain AM-1 genome blastn 4913 523 0.990439770554493 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
14318960 14318960 PRJNA1146029_P_NODE_14792_length_259_cov_1.241935_g14511_i0 PRJNA1146029 14792 259 1.241935 3.21661165 Geoalkalibacter subterraneus 483547 Bacteria Bacteria 329 9.73e-86   NTclustered gi|749207097|gb|CP010311.1| 483547 g14511 i0 89.575 2.94208494208494 259 27 100 0 1 259 968691 968949 Geoalkalibacter subterraneus strain Red1, complete genome blastn 762 329 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geoalkalibacteraceae Geoalkalibacter Geoalkalibacter subterraneus
20691693 20691693 PRJNA1146029_P_NODE_3537_length_454_cov_1.503937_g3259_i0 PRJNA1146029 3537 454 1.503937 6.82787398 Desulfosediminicola ganghwensis 2569540 Bacteria Bacteria 54.7 0.012   NTclustered gi|1861338669|gb|CP050699.1| 2569540 g3259 i0 100 0.0638766519823789 29 0 6 0 327 355 4734436 4734464 Desulfosediminicola ganghwensis strain IMCC35004 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfosediminicola Desulfosediminicola ganghwensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;