RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1146029" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1146029 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
290263 290263 PRJNA1146029_P_NODE_8241_length_315_cov_1.557851_g7960_i0 PRJNA1146029 8241 315 1.557851 4.90723065 Lecane bulla 96446 Rotifera other_Eukaryota 399 9.139999999999997e-107   NTclustered gi|83285134|gb|DQ297775.1| 96446 g7960 i0 89.524 99.9269841269841 315 33 100 0 1 315 457 143 Lecane bulla cytochrome c oxidase subunit I gene, partial cds; mitochondrial blastn 31477 399 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lecanidae Lecane Lecane bulla
4117224 4117224 PRJNA1146029_P_NODE_6424_length_349_cov_1.394928_g6146_i0 PRJNA1146029 6424 349 1.394928 4.86829872 Brachionus rubens 392764 Rotifera other_Eukaryota 324 6.33e-84   NTclustered gi|632795131|gb|KJ489418.1| 392764 g6146 i0 83.807 69.1661891117479 352 46 99 4 2 349 784 1128 Brachionus rubens chromosome II mitochondrion, complete sequence blastn 24139 324 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
9218199 9218199 PRJNA1146029_P_NODE_3228_length_476_cov_1.389578_g2951_i0 PRJNA1146029 3228 476 1.389578 6.61439128 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 305 3.22e-78   NTclustered gi|1143271481|gb|KX822781.1| 104777 g2951 i0 79.717 51.2457983193277 424 84 89 2 1 423 18500 18922 Brachionus calyciflorus chromosome I mitochondrion, complete sequence blastn 24393 305 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
16867370 16867370 PRJNA1146029_P_NODE_7414_length_329_cov_1.777344_g7135_i0 PRJNA1146029 7414 329 1.777344 5.84746176 Brachionus koreanus 1199090 Rotifera other_Eukaryota 76.8 1.84e-9   NTclustered gi|1252327087|gb|KY828435.1| 1199090 g7135 i0 81.188 0.407294832826748 101 13 31 6 229 329 887 793 Brachionus koreanus elongation factor 1 alpha mRNA, partial cds blastn 134 76.8 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus koreanus
21967059 21967059 PRJNA1146029_P_NODE_5838_length_363_cov_1.820690_g5560_i0 PRJNA1146029 5838 363 1.82069 6.6091047 Brachionus rubens 392764 Rotifera other_Eukaryota 318 3.07e-82   NTclustered gi|632795126|gb|KJ489417.1| 392764 g5560 i0 82.692 62.7933884297521 364 58 99 5 1 362 100 460 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 22794 318 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
23242573 23242573 PRJNA1146029_P_NODE_4579_length_404_cov_1.395770_g4301_i0 PRJNA1146029 4579 404 1.39577 5.6389108 Brachionus rubens 392764 Rotifera other_Eukaryota 261 5.910000000000001e-65   NTclustered gi|632795126|gb|KJ489417.1| 392764 g4301 i0 86.555 41.4653465346535 238 30 59 2 154 390 875 639 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 16752 261 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;