RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1146029" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1146029 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9961738 9961738 PRJNA1146029_P_NODE_12728_length_273_cov_1.540000_g12447_i0 PRJNA1146029 12728 273 1.54 4.2042 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 130 1.13e-25   NTclustered gi|1923460176|gb|MW187717.1| 100861 g12447 i0 89.423 39.6739926739927 104 9 38 2 1 103 277 175 Aphanomyces euteiches isolate CCRJB_40 large subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 10831 130 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
17611306 17611306 PRJNA1146029_P_NODE_19734_length_245_cov_0.895349_g19453_i0 PRJNA1146029 19734 245 0.895349 2.19360505 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 159 1.27e-34   NTclustered gi|2795050879|ref|XM_067944282.1| 4785 g19453 i0 79.911 10.3877551020408 224 39 90 3 25 245 693 473 Phytophthora cinnamomi Mitochondrial Carrier (MC) Family (IUM83_19238), partial mRNA blastn 2545 159 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
17611307 17611307 PRJNA1146029_P_NODE_19774_length_245_cov_0.895349_g19493_i0 PRJNA1146029 19774 245 0.895349 2.19360505 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 154 5.89e-33   NTclustered gi|166301|gb|J05597.1|ACKBTUB 4767 g19493 i0 88.462 48.8857142857143 130 11 52 2 119 245 1542 1414 A.klebsiana beta-tubulin gene, complete cds blastn 11977 154 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya klebsiana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;