RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1146029" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1146029 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11768946 11768946 PRJNA1146029_P_NODE_910_length_938_cov_3.536416_g706_i0 PRJNA1146029 910 938 3.536416 33.17158208 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 1027 0   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g706 i0 86.723 114.970149253731 949 97 100 21 1 938 2075695 2076625 Gemmatimonas phototrophica strain AP64, complete genome blastn 107842 1027 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
16867074 16867074 PRJNA1146029_P_NODE_1074_length_865_cov_3.351010_g851_i0 PRJNA1146029 1074 865 3.35101 28.9862365 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 1059 0   NTclustered gi|2874253755|emb|OY969695.1| 412054 g851 i0 88.953 505.225433526012 869 81 99 13 1 860 343727 342865 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 437020 1059 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
19416276 19416276 PRJNA1146029_P_NODE_4876_length_392_cov_1.811912_g4598_i0 PRJNA1146029 4876 392 1.811912 7.10269504 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 324 7.19e-84   NTclustered gi|2874254107|emb|OY970192.1| 412054 g4598 i0 85.669 202.020408163265 314 37 79 8 29 337 2605401 2605711 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 79192 324 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;