RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA1146029" and tax_phylum = "Elusimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Elusimicrobiota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1146029 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6668049 6668049 PRJNA1146029_P_NODE_21246_length_242_cov_1.822485_g20965_i0 PRJNA1146029 21246 242 1.822485 4.4104137 Elusimicrobiota bacterium 2030800 Bacteria Bacteria 281 2.55e-71   NTclustered gi|2233025045|gb|CP096137.1| 2030800 g20965 i0 88.412 0.962809917355372 233 27 96 0 9 241 2849528 2849760 MAG: Elusimicrobia bacterium isolate JAD_PAG50586_1 chromosome, complete genome blastn 233 281 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;