RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1146029" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1146029 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1033653 1033653 PRJNA1146029_P_NODE_2361_length_559_cov_2.520576_g2086_i0 PRJNA1146029 2361 559 2.520576 14.09001984 Metazoa 33208 Echinodermata other_Eukaryota 370 1.34e-97   NTclustered gi|780036166|ref|XM_786257.4| 7668 g2086 i0 78.863 96.2611806797853 563 107 99 11 1 557 943 387 PREDICTED: Strongylocentrotus purpuratus 60S ribosomal protein L3 (LOC586477), mRNA blastn 53810 370 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
20691574 20691574 PRJNA1146029_P_NODE_16677_length_250_cov_0.870056_g16396_i0 PRJNA1146029 16677 250 0.870056 2.17514 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 163 1e-35   NTclustered gi|2037954100|ref|XM_041622201.1| 7654 g16396 i0 78.571 20.016 252 50 100 4 1 250 703 454 PREDICTED: Lytechinus variegatus NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-like (LOC121426059), mRNA blastn 5004 163 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;