RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1146029" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1146029 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
290146 290146 PRJNA1146029_P_NODE_21621_length_242_cov_0.911243_g21340_i0 PRJNA1146029 21621 242 0.911243 2.20520806 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 150 7.509999999999998e-32   NTclustered gi|2621706268|emb|OY764162.1| 2026734 g21340 i0 78.099 85.0082644628099 242 49 100 4 1 242 1578700 1578937 MAG: Dehalococcoidia bacterium isolate c2b86379-bd31-4c30-aa6f-eeb60e07e050 genome assembly, chromosome: 1 blastn 20572 150 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
3584113 3584113 PRJNA1146029_P_NODE_2303_length_567_cov_1.787449_g2028_i0 PRJNA1146029 2303 567 1.787449 10.13483583 Herpetosiphon 64 Bacteria Bacteria 595 2.0599999999999994e-165   NTclustered gi|470482680|ref|NR_076546.1| 65 g2028 i0 93.766 44.0017636684303 401 18 100 7 1 398 606 210 Herpetosiphon aurantiacus strain DSM 785 23S ribosomal RNA gene, complete sequence blastn 24949 601 0.990016638935108 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus
16867217 16867217 PRJNA1146029_P_NODE_17694_length_248_cov_1.674286_g17413_i0 PRJNA1146029 17694 248 1.674286 4.15222928 Herpetosiphon aurantiacus 65 Bacteria Bacteria 414 2.48e-111   NTclustered gi|159889572|gb|CP000875.1| 316274 g17413 i0 96.774 18.0483870967742 248 8 100 0 1 248 6222118 6221871 Herpetosiphon aurantiacus DSM 785, complete genome blastn 4476 414 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;