RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1146029" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1146029 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4117155 4117155 PRJNA1146029_P_NODE_21184_length_243_cov_0.864706_g20903_i0 PRJNA1146029 21184 243 0.864706 2.10123558 Fimbriimonas sp. 1936159 Bacteria Bacteria 106 1.66e-18   NTclustered gi|2778022393|emb|OZ123194.1| 1936159 g20903 i0 89.286 1.23456790123457 84 9 35 0 14 97 216716 216633 MAG: Fimbriimonas sp. isolate MsE-30jul19-LR-01 genome assembly, chromosome: 1 blastn 300 106 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
7943246 7943246 PRJNA1146029_P_NODE_21387_length_242_cov_0.911243_g21106_i0 PRJNA1146029 21387 242 0.911243 2.20520806 Armatimonadetes bacterium Uphvl-Ar2 2004468 Bacteria Bacteria 117 7.62e-22   NTclustered gi|1199101103|gb|CP021424.1| 2004468 g21106 i0 90 7.08677685950413 90 9 37 0 1 90 313747 313658 Armatimonadetes bacterium Uphvl-Ar2 genome blastn 1715 117 1 Bacteria   Bacillati Armatimonadota         Armatimonadetes bacterium Uphvl-Ar2
10493955 10493955 PRJNA1146029_P_NODE_9989_length_290_cov_1.350230_g9708_i0 PRJNA1146029 9989 290 1.35023 3.915667 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 134 9.32e-27   NTclustered gi|2076447151|gb|CP075366.1| 2682144 g9708 i0 84.848 0.631034482758621 132 20 46 0 9 140 117271 117140 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM8 chromosome blastn 183 134 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
15592868 15592868 PRJNA1146029_P_NODE_11213_length_283_cov_1.419048_g10932_i0 PRJNA1146029 11213 283 1.419048 4.01590584 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 119 2.54e-22   NTclustered gi|2076452338|gb|CP075364.1| 2682144 g10932 i0 81.507 4.84452296819788 146 25 51 2 3 147 1451212 1451356 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM1 chromosome blastn 1371 119 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
21435501 21435501 PRJNA1146029_P_NODE_10557_length_287_cov_1.275701_g10276_i0 PRJNA1146029 10557 287 1.275701 3.66126187 Candidatus Nitrosymbiomonas 2819028 Bacteria Bacteria 158 5.47e-34   NTclustered gi|1996217993|dbj|AP021858.1| 2608984 g10276 i0 85.906 14.5296167247387 149 19 52 2 139 287 512990 512844 Candidatus Nitrosymbiomonas proteolyticus DNA, complete genome blastn 4170 158 1 Bacteria   Bacillati Armatimonadota       Candidatus Nitrosymbiomonas Candidatus Nitrosymbiomonas proteolyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;