RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1146029" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 2 ✖

bioproject 1

  • PRJNA1146029 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1033684 1033684 PRJNA1146029_P_NODE_9541_length_295_cov_1.387387_g9260_i0 PRJNA1146029 9541 295 1.387387 4.09279165 Chlamydomonadaceae 3051 Plants Plants 540 4.79e-149   NTclustered gi|669688710|gb|KM020117.1| 179866 g9260 i0 99.661 99.9796610169492 295 1 100 0 1 295 927 633 Heterochlamydomonas inaequalis strain SAG 4.75 18S ribosomal RNA gene, partial sequence blastn 29494 540 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Heterochlamydomonas Heterochlamydomonas inaequalis
6667882 6667882 PRJNA1146029_P_NODE_12106_length_277_cov_1.509804_g11825_i0 PRJNA1146029 12106 277 1.509804 4.18215708 Follicularia texensis 1082342 Plants Plants 496 9.8e-136   NTclustered gi|523583547|gb|KC145444.1| 1082342 g11825 i0 98.917 100 277 3 100 0 1 277 1162 1438 Follicularia texensis strain UTEX 1241 28S ribosomal RNA gene, partial sequence blastn 27700 496 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Radiococcaceae Follicularia Follicularia texensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;