RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1146029" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 8 ✖

bioproject 1

  • PRJNA1146029 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4117131 4117131 PRJNA1146029_P_NODE_19644_length_245_cov_0.895349_g19363_i0 PRJNA1146029 19644 245 0.895349 2.19360505 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 440 4.0399999999999986e-119   NTclustered gi|1031970252|gb|CP015686.1| 85057 g19363 i0 99.184 3.93469387755102 245 1 100 1 1 245 452377 452620 Trypanosoma cruzi cruzi strain Sylvio X10/cl1 chromosome TcI36, partial sequence blastn 964 440 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
11236908 11236908 PRJNA1146029_P_NODE_20889_length_243_cov_0.905882_g20608_i0 PRJNA1146029 20889 243 0.905882 2.20129326 Leishmania 5658 Euglenozoa other_Eukaryota 156 1.6200000000000002e-33   NTclustered gi|2593248390|emb|OY748414.1| 5660 g20608 i0 87.879 10.5349794238683 132 16 54 0 104 235 1343718 1343587 Leishmania braziliensis isolate MHOM/BR/75/M2904 genome assembly, chromosome: 20 blastn 2560 156 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania braziliensis
12512317 12512317 PRJNA1146029_P_NODE_18430_length_247_cov_0.885057_g18149_i0 PRJNA1146029 18430 247 0.885057 2.18609079 Naegleria 5761 Heterolobosea other_Eukaryota 457 4.05e-124   NTclustered gi|2618963742|gb|OR769034.1| 5762 g18149 i0 100 10.2834008097166 247 0 100 0 1 247 5686 5440 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 2540 457 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
13043883 13043883 PRJNA1146029_P_NODE_5351_length_376_cov_2.620462_g5073_i0 PRJNA1146029 5351 376 2.620462 9.85293712 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 52.8 0.036   NTclustered gi|1031970221|gb|CP015655.1| 85057 g5073 i0 100 0.074468085106383 28 0 7 0 67 94 50537 50510 Trypanosoma cruzi cruzi strain Sylvio X10/cl1 chromosome TcI5, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
16867375 16867375 PRJNA1146029_P_NODE_7834_length_321_cov_3.354839_g7555_i0 PRJNA1146029 7834 321 3.354839 10.76903319 Parabodo caudatus 351713 Euglenozoa other_Eukaryota 571 1.8699999999999993e-158   NTclustered gi|45739057|gb|AY490215.1| 351713 g7555 i0 98.754 96.2398753894081 321 4 100 0 1 321 54 374 Bodo caudatus 18S ribosomal RNA gene, partial sequence blastn 30893 571 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Parabodonida   Parabodo Parabodo caudatus
21435508 21435508 PRJNA1146029_P_NODE_11297_length_282_cov_2.200957_g11016_i0 PRJNA1146029 11297 282 2.200957 6.20669874 Naegleria 5761 Heterolobosea other_Eukaryota 215 3.13e-51   NTclustered gi|2031946985|emb|OD958550.1| 5763 g11016 i0 82.239 43.4858156028369 259 36 92 5 1 259 3012 3260 Naegleria fowleri Karachi_NF001 strain blastn 12263 215 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
21967070 21967070 PRJNA1146029_P_NODE_6438_length_349_cov_0.840580_g6160_i0 PRJNA1146029 6438 349 0.84058 2.9336242 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 599 9.389999999999997e-167   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g6160 i0 97.708 22.7363896848138 349 7 100 1 1 349 3202 3549 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7935 599 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
25259933 25259933 PRJNA1146029_P_NODE_14340_length_262_cov_1.560847_g14059_i0 PRJNA1146029 14340 262 1.560847 4.08941914 Kinetoplastea 5653 Euglenozoa other_Eukaryota 215 2.88e-51   NTclustered gi|2026667531|dbj|LC618031.1| 67003 g14059 i0 95.556 72.8702290076336 135 5 51 1 1 134 3465 3331 Trypanosoma theileri OSK-16 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, ITS3, ITS4, partial and complete sequence blastn 19092 217 0.990783410138249 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;