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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA1146029" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 10 ✖

bioproject 1

  • PRJNA1146029 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
290025 290025 PRJNA1146029_P_NODE_15261_length_255_cov_2.285714_g14980_i0 PRJNA1146029 15261 255 2.285714 5.8285707 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 180 1.02e-40   NTclustered gi|909719645|gb|KT185625.1| 5778 g14980 i0 79.848 49.1294117647059 263 40 99 12 1 254 4484 4742 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 12528 180 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
290173 290173 PRJNA1146029_P_NODE_3061_length_488_cov_2.498795_g2784_i0 PRJNA1146029 3061 488 2.498795 12.1941196 Dictyostelium discoideum 44689 Evosea other_Eukaryota 331 5.46e-86   NTclustered gi|66805998|ref|XM_631629.1| 352472 g2784 i0 81.146 8.53688524590164 419 73 85 4 61 476 1745 1330 Dictyostelium discoideum AX4 elongation factor 2 (efbA) mRNA, complete cds blastn 4166 331 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
290228 290228 PRJNA1146029_P_NODE_6381_length_350_cov_1.111913_g6103_i0 PRJNA1146029 6381 350 1.111913 3.8916955 Phalansterium filosum 857046 Evosea other_Eukaryota 285 2.99e-72   NTclustered gi|300078501|gb|GU001163.1| 857046 g6103 i0 82.249 95.6828571428571 338 53 96 7 13 347 1923 2256 Phalansterium sp. EEG-2010/THA 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 33489 285 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium filosum
2308942 2308942 PRJNA1146029_P_NODE_18982_length_246_cov_0.890173_g18701_i0 PRJNA1146029 18982 246 0.890173 2.18982558 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 449 6.74e-122   NTclustered gi|300078496|gb|GU001158.1| 5778 g18701 i0 99.593 7.04065040650407 246 1 100 0 1 246 957 1202 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1732 449 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10493849 10493849 PRJNA1146029_P_NODE_2709_length_519_cov_2.331839_g2432_i0 PRJNA1146029 2709 519 2.331839 12.10224441 Phalansterium filosum 857046 Evosea other_Eukaryota 257 1e-63   NTclustered gi|300078501|gb|GU001163.1| 857046 g2432 i0 80.851 36.6435452793834 329 62 63 1 174 502 2890 2563 Phalansterium sp. EEG-2010/THA 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19018 257 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium filosum
11236919 11236919 PRJNA1146029_P_NODE_3929_length_431_cov_1.620112_g3651_i0 PRJNA1146029 3929 431 1.620112 6.98268272 Chaos 160821 Tubulinea other_Eukaryota 429 1.64e-115   NTclustered gi|17902587|emb|AJ314606.1| 160822 g3651 i0 91.167 72.1670533642691 317 26 74 1 106 422 926 1240 Chaos nobile partial 16S rRNA gene, strain CCAP 1511/2 blastn 31104 433 0.990762124711316 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos nobile
13043904 13043904 PRJNA1146029_P_NODE_6871_length_339_cov_1.875940_g6593_i0 PRJNA1146029 6871 339 1.87594 6.3594366 Stenamoeba dejonckheerei 2730938 Discosea other_Eukaryota 542 1.56e-149   NTclustered gi|1835259542|gb|MT386405.1| 2730938 g6593 i0 95.601 61.8259587020649 341 10 100 5 1 339 1484 1821 Stenamoeba dejonckheerei strain 32 small subunit ribosomal RNA gene, partial sequence blastn 20959 542 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Stenamoeba Stenamoeba dejonckheerei
14318999 14318999 PRJNA1146029_P_NODE_17432_length_249_cov_0.875000_g17151_i0 PRJNA1146029 17432 249 0.875 2.17875 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 191 4.58e-44   NTclustered gi|300078497|gb|GU001159.1| 200886 g17151 i0 84.896 73.574297188755 192 25 76 3 1 190 4128 4317 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18320 191 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
20691526 20691526 PRJNA1146029_P_NODE_13837_length_266_cov_1.253886_g13556_i0 PRJNA1146029 13837 266 1.253886 3.33533676 Perichaena dictyonema 2951132 Evosea other_Eukaryota 448 2.6599999999999996e-121   NTclustered gi|2250222210|gb|ON713340.1| 2951132 g13556 i0 97.004 93.9097744360902 267 6 100 2 1 266 813 1078 Perichaena dictyonema voucher MA59057 small subunit ribosomal RNA gene, partial sequence blastn 24980 448 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Perichaena Perichaena dictyonema
22710548 22710548 PRJNA1146029_P_NODE_338_length_1447_cov_4.878457_g224_i0 PRJNA1146029 338 1447 4.878457 70.59127279 Dictyostelium 5782 Evosea other_Eukaryota 736 0   NTclustered gi|7276|emb|X55972.1| 44689 g224 i0 77.419 57.3255010366275 1271 264 87 20 20 1274 16 1279 D. discoideum EF1-II gene for elongation factor 1 alpha blastn 82950 736 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;