RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1145997" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1145997 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16866684 16866684 PRJNA1145997_P_NODE_41014_length_260_cov_1.529412_g38395_i0 PRJNA1145997 41014 260 1.529412 3.9764712 Nitratidesulfovibrio liaohensis 2604158 Bacteria Bacteria 305 1.65e-78   NTclustered gi|2575677524|gb|CP133659.1| 2604158 g38395 i0 89.627 1.83461538461538 241 24 92 1 6 245 635886 636126 Nitratidesulfovibrio liaohensis strain KPS chromosome, complete genome blastn 477 305 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio liaohensis
20690982 20690982 PRJNA1145997_P_NODE_35337_length_306_cov_1.339056_g32718_i0 PRJNA1145997 35337 306 1.339056 4.09751136 Nitratidesulfovibrio liaohensis 2604158 Bacteria Bacteria 411 4.089999999999999e-110   NTclustered gi|2575677524|gb|CP133659.1| 2604158 g32718 i0 90.566 1.47058823529412 318 18 100 4 1 306 678951 678634 Nitratidesulfovibrio liaohensis strain KPS chromosome, complete genome blastn 450 411 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio liaohensis
24515430 24515430 PRJNA1145997_P_NODE_41440_length_257_cov_2.130435_g38821_i0 PRJNA1145997 41440 257 2.130435 5.47521795 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 75 4.99e-9   NTclustered gi|2556892445|gb|CP129479.1| 2202153 g38821 i0 88.71 2.45525291828794 62 6 24 1 23 84 861757 861697 MAG: Thermodesulfobacteriota bacterium isolate cMAG.17 chromosome, complete genome blastn 631 75 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;