RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1145997" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1145997 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5392934 5392934 PRJNA1145997_P_NODE_50085_length_233_cov_12.737500_g47466_i0 PRJNA1145997 50085 233 12.7375 29.678375 Caldilinea aerophila 133453 Bacteria Bacteria 176 1.19e-39   NTclustered gi|559130397|tpe|HG520707.1| 926550 g47466 i0 84.916 5.63090128755365 179 22 76 5 22 197 1 177 TPA: Caldilinea aerophila DSM 14535 = NBRC 104270 tmRNA gene Caldi_aerop_14535 blastn 1312 176 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae Caldilinea Caldilinea aerophila
21966077 21966077 PRJNA1145997_P_NODE_23478_length_571_cov_6.393574_g20870_i0 PRJNA1145997 23478 571 6.393574 36.50730754 Candidatus Chlorohelix allophototropha 3003348 Bacteria Bacteria 139 4.2e-28   NTclustered gi|2530753422|gb|CP128403.1| 3003348 g20870 i0 82.39 3.32049036777583 159 28 28 0 28 186 7887 8045 Candidatus Chlorohelix allophototropha isolate L227-S17 plasmid unnamed3, complete sequence blastn 1896 139 1 Bacteria   Bacillati Chloroflexota Chloroflexia Candidatus Chloroheliales Candidatus Chloroheliaceae Candidatus Chlorohelix Candidatus Chlorohelix allophototropha

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;