RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1145997" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 5 ✖

bioproject 1

  • PRJNA1145997 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2840131 2840131 PRJNA1145997_P_NODE_26643_length_466_cov_9.559796_g24026_i0 PRJNA1145997 26643 466 9.559796 44.54864936 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 459 2.2799999999999997e-124   NTclustered gi|2874253749|emb|OY969623.1| 1914239 g24026 i0 85.339 82.4184549356223 457 51 95 13 14 457 7051805 7051352 MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 blastn 38407 459 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
16866617 16866617 PRJNA1145997_P_NODE_36874_length_290_cov_1.534562_g34255_i0 PRJNA1145997 36874 290 1.534562 4.4502298 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 56.5 0.002   NTclustered gi|2022020957|gb|CP059069.1| 2562705 g34255 i0 97.059 0.606896551724138 34 0 11 1 74 106 3991175 3991208 Akkermansiaceae bacterium strain AJA081-3 chromosome, complete genome blastn 176 56.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
18141440 18141440 PRJNA1145997_P_NODE_51295_length_211_cov_20.188406_g48676_i0 PRJNA1145997 51295 211 20.188406 42.59753666 Polystyrenella longa 2528007 Bacteria Bacteria 159 1.0599999999999999e-34   NTclustered gi|1712652806|gb|CP036281.1| 2528007 g48676 i0 82.955 4.67298578199052 176 30 83 0 31 206 1415485 1415660 Polystyrenella longa strain Pla110 chromosome, complete genome blastn 986 159 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Polystyrenella Polystyrenella longa
21435300 21435300 PRJNA1145997_P_NODE_25317_length_509_cov_4.534404_g22701_i0 PRJNA1145997 25317 509 4.534404 23.08011636 Pirellula 123 Bacteria Bacteria 466 1.4999999999999998e-126   NTclustered gi|470485626|ref|NR_076710.1| 125 g22701 i0 83.826 92.8330058939096 507 65 97 13 15 508 1709 1207 Pirellula staleyi strain DSM 6068 23S ribosomal RNA gene, complete sequence blastn 47252 466 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Pirellula Pirellula staleyi
21966245 21966245 PRJNA1145997_P_NODE_31078_length_364_cov_1.072165_g28459_i0 PRJNA1145997 31078 364 1.072165 3.9026806 Humisphaera borealis 2807512 Bacteria Bacteria 529 1.3099999999999996e-145   NTclustered gi|1927742986|gb|CP063458.1| 2807512 g28459 i0 92.877 68.4368131868132 365 25 100 1 1 364 5062828 5063192 Humisphaera borealis strain M1803 chromosome, complete genome blastn 24911 529 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Tepidisphaerales Tepidisphaeraceae Humisphaera Humisphaera borealis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;