RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1145997" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA1145997 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2840351 2840351 PRJNA1145997_P_NODE_40023_length_266_cov_6.450777_g37404_i0 PRJNA1145997 40023 266 6.450777 17.15906682 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 335 2.159999999999999e-87   NTclustered gi|470500808|ref|XM_004347041.1| 1257118 g37404 i0 96.985 1.48872180451128 199 6 75 0 23 221 448 646 Acanthamoeba castellanii str. Neff glycosyl hydrolases family 25 subfamily protein (ACA1_384320), partial mRNA blastn 396 335 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19415785 19415785 PRJNA1145997_P_NODE_50576_length_228_cov_2.477419_g47957_i0 PRJNA1145997 50576 228 2.477419 5.64851532 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 169 1.93e-37   NTclustered gi|470484553|ref|XM_004344028.1| 1257118 g47957 i0 96.117 28.2543859649123 103 4 45 0 110 212 1434 1332 Acanthamoeba castellanii str. Neff Sadenosyl-L-homocysteine hydrolase, putative (ACA1_054200), partial mRNA blastn 6442 169 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21966561 21966561 PRJNA1145997_P_NODE_50618_length_227_cov_5.922078_g47999_i0 PRJNA1145997 50618 227 5.922078 13.44311706 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 135 1.95e-27   NTclustered gi|470413004|ref|XM_004336492.1| 1257118 g47999 i0 97.468 0.348017621145374 79 2 35 0 21 99 972 1050 Acanthamoeba castellanii str. Neff sterol 24c-methyltransferase (ACA1_193300), partial mRNA blastn 79 135 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23242111 23242111 PRJNA1145997_P_NODE_51419_length_209_cov_5.455882_g48800_i0 PRJNA1145997 51419 209 5.455882 11.40279338 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 298 2.13e-76   NTclustered gi|470426640|ref|XM_004337871.1| 1257118 g48800 i0 98.246 0.818181818181818 171 2 82 1 2 172 1273 1442 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_188540), partial mRNA blastn 171 298 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24515596 24515596 PRJNA1145997_P_NODE_50700_length_226_cov_17.732026_g48081_i0 PRJNA1145997 50700 226 17.732026 40.07437876 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 285 1.82e-72   NTclustered gi|399764261|gb|JQ271772.1| 1105345 g48081 i0 91.748 8.29646017699115 206 16 91 1 22 226 78 283 Vexillifera bacillipedes strain 6HZM 18S ribosomal RNA gene, partial sequence blastn 1875 285 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;