RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1145574" and tax_clade = "Cyanobacteriota/Melainabacteria group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA1145574 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18140359 18140359 PRJNA1145574_P_NODE_13455_length_246_cov_0.901734_g13271_i0 PRJNA1145574 13455 246 0.901734 2.21826564 Cyanobium sp. M30B3 2831057 Bacteria Bacteria 316 7.14e-82   NTclustered gi|2041287931|gb|CP073761.1| 2831057 g13271 i0 89.837 36.2560975609756 246 25 100 0 1 246 2964760 2965005 MAG: Cyanobium sp. M30B3 chromosome, complete genome blastn 8919 316 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Cyanobium Cyanobium sp. M30B3
18140385 18140385 PRJNA1145574_P_NODE_14935_length_242_cov_0.923077_g14751_i0 PRJNA1145574 14935 242 0.923077 2.23384634 Cyanobium sp. NIES-981 1851505 Bacteria Bacteria 241 4.33e-59   NTclustered gi|1034210027|emb|LT578417.1| 1851505 g14751 i0 86.099 8.08264462809917 223 31 92 0 4 226 1684118 1684340 Cyanobium sp. NIES-981 strain NIES-981 genome assembly, chromosome: I blastn 1956 241 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Cyanobium Cyanobium sp. NIES-981
18140448 18140448 PRJNA1145574_P_NODE_9855_length_272_cov_1.175879_g9671_i0 PRJNA1145574 9855 272 1.175879 3.19839088 uncultured Chroococcidiopsis sp. 259957 Bacteria Bacteria 377 3.63e-100   NTclustered gi|225696224|gb|FJ805891.1| 259957 g9671 i0 91.636 151.974264705882 275 19 100 3 1 272 1757 2030 Uncultured Chroococcidiopsis sp. clone NA2_5 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 41337 377 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis uncultured Chroococcidiopsis sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;