RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1145276" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1145276 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5391631 5391631 PRJNA1145276_P_NODE_19225_length_242_cov_0.911243_g19168_i0 PRJNA1145276 19225 242 0.911243 2.20520806 Hymenobacter nivis 1850093 Bacteria Bacteria 54.7 0.006   NTclustered gi|1391209682|gb|CP029145.1| 1850093 g19168 i0 100 0.119834710743802 29 0 12 0 12 40 3566112 3566084 Hymenobacter nivis strain NBRC 111535 chromosome, complete genome blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter nivis
6666340 6666340 PRJNA1145276_P_NODE_3106_length_552_cov_1.196242_g3049_i0 PRJNA1145276 3106 552 1.196242 6.60325584 Chitinophagaceae bacterium DXS 3051226 Bacteria Bacteria 870 0   NTclustered gi|2524614756|gb|CP128386.1| 3051226 g3049 i0 94.991 322.248188405797 559 21 100 5 1 552 6304733 6305291 Chitinophagaceae bacterium DXS chromosome blastn 177881 870 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   Chitinophagaceae bacterium DXS
11767095 11767095 PRJNA1145276_P_NODE_3050_length_556_cov_2.231884_g2993_i0 PRJNA1145276 3050 556 2.231884 12.40927504 Sediminibacterium sp. KACHI17 1751071 Bacteria Bacteria 822 0   NTclustered gi|2690291631|dbj|AP029612.1| 1751071 g2993 i0 93.369 255.214028776978 558 34 100 3 1 556 2979174 2978618 Sediminibacterium sp. KACHI17 DNA, complete genome blastn 141899 822 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Sediminibacterium Sediminibacterium sp. KACHI17

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;