RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1145276" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1145276 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
288258 288258 PRJNA1145276_P_NODE_14361_length_266_cov_1.595855_g14304_i0 PRJNA1145276 14361 266 1.595855 4.2449743 Oscillospiraceae bacterium 2485925 Bacteria Bacteria 54.7 0.007   NTclustered gi|2188789952|dbj|AP025561.1| 2485925 g14304 i0 100 0.109022556390977 29 0 11 0 230 258 384512 384540 Oscillospiraceae bacterium CE91-St42 DNA, complete genome blastn 29 54.7 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae   Oscillospiraceae bacterium
24514061 24514061 PRJNA1145276_P_NODE_10080_length_321_cov_1.326613_g10023_i0 PRJNA1145276 10080 321 1.326613 4.25842773 Lactobacillus iners 147802 Bacteria Bacteria 409 1.55e-109   NTclustered gi|2769739957|gb|CP160078.1| 147802 g10023 i0 92.657 457.97507788162 286 18 88 3 38 321 4531 4247 Lactobacillus iners strain 0998_735_1_CBA_90B_S800 chromosome, complete genome blastn 147010 409 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus iners

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;