RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA1145276" and tax_kingdom = "Shotokuvirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 1 ✖

bioproject 1

  • PRJNA1145276 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6666276 6666276 PRJNA1145276_P_NODE_17526_length_246_cov_0.890173_g17469_i0 PRJNA1145276 17526 246 0.890173 2.18982558 Alphapapillomavirus 7 337042 Viruses Viruses 451 1.87e-122   NTclustered gi|1258167972|gb|MF288727.1| 333761 g17469 i0 100 99.1869918699187 244 0 99 0 3 246 6395 6152 Human papillomavirus 18 isolate 1494573_N-P, complete genome blastn 24400 451 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 7

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;