RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1144090" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1144090 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4114501 4114501 PRJNA1144090_P_NODE_61004_length_325_cov_1.507937_g60469_i0 PRJNA1144090 61004 325 1.507937 4.90079525 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 387 7.37e-103   NTclustered gi|2874254040|emb|OY970364.1| 412056 g60469 i0 88.182 176.289230769231 330 32 100 7 1 325 2169111 2168784 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04463.bin.c.15 genome assembly, chromosome: 1 blastn 57294 387 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
8686196 8686196 PRJNA1144090_P_NODE_92247_length_261_cov_1.638298_g91712_i0 PRJNA1144090 92247 261 1.638298 4.27595778 Verrucomicrobiota 74201 Bacteria Bacteria 416 7.329999999999999e-112   NTclustered gi|2874254065|emb|OY970130.1| 412056 g91712 i0 95.402 42.3486590038314 261 12 100 0 1 261 5153121 5152861 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 11053 416 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
20689203 20689203 PRJNA1144090_P_NODE_82497_length_277_cov_1.882353_g81962_i0 PRJNA1144090 82497 277 1.882353 5.21411781 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 412 1.0099999999999997e-110   NTclustered gi|2874254096|emb|OY970179.1| 412056 g81962 i0 93.571 163.158844765343 280 12 99 5 2 277 1726856 1727133 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 45195 412 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
21963672 21963672 PRJNA1144090_P_NODE_111678_length_243_cov_3.741176_g111143_i0 PRJNA1144090 111678 243 3.741176 9.09105768 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 363 8.909999999999999e-96   NTclustered gi|2874254065|emb|OY970130.1| 412056 g111143 i0 94.828 126.604938271605 232 12 95 0 11 242 5152287 5152518 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 30765 363 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;